RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 DMC1Q14565 340 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 ZNF410Q86VK4 478 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 PRKD2Q9BZL6 878 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 IARS2Q9NSE4 1012 aaKnown RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 GALNT4Q8N4A0 578 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 DLGAP2Q9P1A6 1054 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 CRLS1Q9UJA2 301 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 ACTL7BQ9Y614 415 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 EIF4E1BA6NMX2 242 aaKnown RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 CYP1A2P05177 515 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 RARAP10276 462 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 RAP1GAPP47736 663 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 RAB27AP51159 221 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 ZNF157P51786 506 aaPredicted RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 HIST2H2ACQ16777 129 aaPredicted RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 LRRC38Q5VT99 294 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 HIST2H2AA3Q6FI13 130 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 AP4S1Q9Y587 144 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 PMPCBO75439 489 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 SERPINE1P05121 402 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 PYGMP11217 842 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 HOXA10P31260 410 aaPredicted RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 PEX5P50542 639 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 FCGRTP55899 365 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 RPL10AP62906 217 aaKnown RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 MPP3Q13368 585 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 FBXO47Q5MNV8 452 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 RNF180Q86T96 592 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 MTDHQ86UE4 582 aaKnown RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 SLC9A9Q8IVB4 645 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 SAR1AQ9NR31 198 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 PDGFCQ9NRA1 345 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 ADGRA2Q96PE1 1338 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 UBOX5O94941 541 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 CSPG5O95196 566 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 ACO1P21399 889 aaKnown RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 PTPN7P35236 360 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 PLOD1Q02809 727 aaPredicted RBP12.91□□□□□ -0.34
COL4A6-209ENST00000545689 PDPK2PQ6A1A2 396 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 PRMT9Q6P2P2 845 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 C1orf186Q6ZWK4 172 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 COLGALT1Q8NBJ5 622 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 CPNE1Q99829 537 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 CD248Q9HCU0 757 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 WWOXQ9NZC7 414 aa12.91□□□□□ -0.34
COL4A6-209ENST00000545689 KLRC4O43908 158 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 HNRNPH3P31942 346 aaKnown RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 CDK7P50613 346 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 DDX53Q86TM3 631 aaKnown RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 TMPRSS6Q8IU80 811 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 KLHL4Q9C0H6 718 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 MTIF3Q9H2K0 278 aaKnown RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 ROBO3Q96MS0 1386 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 ACKR2O00590 384 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 CYTH3O43739 400 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 DGKIO75912 1065 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 FKBP9O95302 570 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 UBTFL6P0CB48 400 aaPredicted RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 RRP1BQ14684 758 aaKnown RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 MIIPQ5JXC2 388 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 FKBP9P1Q75LS8 142 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 YTHDF3Q7Z739 585 aaKnown RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 CCDC15Q0P6D6 951 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 GNASQ5JWF2 1037 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 TTC33Q6PID6 262 aaPredicted RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 TDRD5Q8NAT2 981 aaKnown RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 ECSITQ9BQ95 431 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 PCYOX1Q9UHG3 505 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 VANGL2Q9ULK5 521 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 E2F8A0AVK6 867 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 MYO1GB0I1T2 1018 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 USP1O94782 785 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 BGNP21810 368 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 GP5P40197 560 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 IFNEQ86WN2 208 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 LZTR1Q8N653 840 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 RFWD2Q8NHY2 731 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 ZMAT2Q96NC0 199 aaKnown RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 RPRD1AQ96P16 312 aaPredicted RBP12.9□□□□□ -0.34
COL4A6-209ENST00000545689 SH3GL1Q99961 368 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 KCTD10Q9H3F6 313 aa12.9□□□□□ -0.34
COL4A6-209ENST00000545689 SUPT7LO94864 414 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 HMGCRP04035 888 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 KRT8P05787 483 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 CDH17Q12864 832 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 PRKAA1Q13131 559 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 SCARA3Q6AZY7 606 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 C3orf67Q6ZVT6 689 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 BBS7Q8IWZ6 715 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 THAP1Q9NVV9 213 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 GPATCH2LQ9NWQ4 482 aa12.9□□□□□ -0.35
COL4A6-209ENST00000545689 APOC4-APOC2K7ER74 178 aa12.89□□□□□ -0.35
COL4A6-209ENST00000545689 DAB1O75553 588 aa12.89□□□□□ -0.35
COL4A6-209ENST00000545689 APOC2P02655 101 aa12.89□□□□□ -0.35
COL4A6-209ENST00000545689 THP07101 528 aa12.89□□□□□ -0.35
COL4A6-209ENST00000545689 TCN1P20061 433 aaPredicted RBP12.89□□□□□ -0.35
COL4A6-209ENST00000545689 ARHGAP15Q53QZ3 475 aa12.89□□□□□ -0.35
COL4A6-209ENST00000545689 LRRC55Q6ZSA7 311 aa12.89□□□□□ -0.35
COL4A6-209ENST00000545689 VAT1Q99536 393 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms