RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 TMLHEQ9NVH6 421 aa5.12□□□□□ -1.59
LIMS1-214ENST00000542845 CFAP97Q9P2B7 532 aa5.12□□□□□ -1.59
LIMS1-214ENST00000542845 UBQLN1Q9UMX0 589 aaKnown RBP5.12□□□□□ -1.59
LIMS1-214ENST00000542845 PCDHGB2Q9Y5G2 931 aa5.12□□□□□ -1.59
LIMS1-214ENST00000542845 NID2Q14112 1375 aa5.12□□□□□ -1.59
LIMS1-214ENST00000542845 ANO9A1A5B4 782 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 ENO4A6NNW6 628 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 H0Y8X5 98 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 SLC9A3R1O14745 358 aaPredicted RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 SLC16A4O15374 487 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 CLDN3O15551 220 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 XPOTO43592 962 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 RFPL3O75679 317 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 KRT38O76015 456 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 FAM13AO94988 1023 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 DEXIO95424 95 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 ADH1CP00326 375 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 NFICP08651 508 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 HMGB1P09429 215 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 ACADMP11310 421 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 ABCB4P21439 1286 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 ACAT1P24752 427 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 PDIA3P30101 505 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 LRPAP1P30533 357 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 GRIK1P39086 918 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 UCNP55089 124 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 PCBP4P57723 403 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 TSPY1Q01534 308 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 GAD2Q05329 585 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 PPP2R3AQ06190 1150 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 IFRD2Q12894 506 aaPredicted RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 STRN3Q13033 797 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 UBAP2LQ14157 1087 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 NOLC1Q14978 699 aaKnown RBP eCLIP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 TEAD4Q15561 434 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 NPY5RQ15761 445 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 TBC1D25Q3MII6 688 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 PKDCCQ504Y2 493 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 EARS2Q5JPH6 523 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 WSCD1Q658N2 575 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 ATG14Q6ZNE5 492 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 ADAT2Q7Z6V5 191 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 ERICH1Q86X53 443 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 EID2Q8N6I1 236 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 C2orf15Q8WU43 125 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 SCFD1Q8WVM8 642 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 KCNE4Q8WWG9 221 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 DNASE2BQ8WZ79 361 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 TTC9Q92623 222 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 KIFAP3Q92845 792 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 BICD1Q96G01 975 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 MRGPRX1Q96LB2 322 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 JAKMIP1Q96N16 626 aaKnown RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 RNF38Q9H0F5 515 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 GJB4Q9NTQ9 266 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 WSB2Q9NYS7 404 aaPredicted RBP5.11□□□□□ -1.59
LIMS1-214ENST00000542845 GCNT4Q9P109 453 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 DEC1Q9P2X7 70 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 ANKRD6Q9Y2G4 727 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 PCDHB6Q9Y5E3 794 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 CPQQ9Y646 472 aa5.11□□□□□ -1.59
LIMS1-214ENST00000542845 A0A0A0MRY4 1105 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 E2F8A0AVK6 867 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 METTL12A8MUP2 240 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 KCNJ18B7U540 433 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 TULP3O75386 442 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 STAU1O95793 577 aaKnown RBP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 MPOP05164 745 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 ITGAVP06756 1048 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 CLTAP09496 248 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 IRF1P10914 325 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 MBL2P11226 248 aaPredicted RBP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 CYP3A5P20815 502 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 MPSTP25325 297 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 VARSP26640 1264 aaKnown RBP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 SCN1AP35498 2009 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 GGCXP38435 758 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 EIF2DP41214 584 aaKnown RBP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 NPTX2P47972 431 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 AARSP49588 968 aaKnown RBP eCLIP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 CCT8P50990 548 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 AFF3P51826 1226 aaKnown RBP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 RAD51AP2Q09MP3 1159 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 SMARCB1Q12824 385 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 TP53BP1Q12888 1972 aaPredicted RBP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 KRT32Q14532 448 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 ZBTB6Q15916 424 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 INAVAQ3KP66 663 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 C9orf57Q5W0N0 161 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 JADE1Q6IE81 842 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 GALNT17Q6IS24 598 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 BLOC1S2Q6QNY1 142 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 PHLPP2Q6ZVD8 1323 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 SPATA2LQ8IUW3 424 aaPredicted RBP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 DHX40Q8IX18 779 aaKnown RBP5.1□□□□□ -1.59
LIMS1-214ENST00000542845 CFAP46Q8IYW2 2715 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 MTMR9Q96QG7 549 aa5.1□□□□□ -1.59
LIMS1-214ENST00000542845 TSPAN10Q9H1Z9 355 aaPredicted RBP5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms