RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ZNF507Q8TCN5 953 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 CCDC127Q96BQ5 260 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 ZNF419Q96HQ0 510 aaPredicted RBP18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 GABRG3Q99928 467 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 TRIM9Q9C026 710 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 AGPAT3Q9NRZ7 376 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 GMIPQ9P107 970 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 NXF1Q9UBU9 619 aaKnown RBP18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 GPSM3Q9Y4H4 160 aa18.88■□□□□ 0.61
CLSTN3-214ENST00000542663 PRRT4C9JH25 899 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 EIF3DO15371 548 aaKnown RBP eCLIP18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 CACNG3O60359 315 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 ZNF217O75362 1048 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 SYPP08247 313 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 RDXP35241 583 aaKnown RBP18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 CDH8P55286 799 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 HNRNPDQ14103 355 aaKnown RBP18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 TRIP6Q15654 476 aaKnown RBP18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 GRAMD4Q6IC98 578 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 TOGARAM2Q6ZUX3 1019 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 NUDT18Q6ZVK8 323 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 CHPFQ8IZ52 775 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 ZMIZ2Q8NF64 920 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 SMYD3Q9H7B4 428 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 DNAJC17Q9NVM6 304 aaKnown RBP18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 RAD54BQ9Y620 910 aa18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 MORC2Q9Y6X9 1032 aaPredicted RBP18.87■□□□□ 0.61
CLSTN3-214ENST00000542663 IGSF10Q6WRI0 2623 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 CLIC2O15247 247 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 CYP2J2P51589 502 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 SCAPQ12770 1279 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 SLC14A1Q13336 389 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 PLEKHG6Q3KR16 790 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 HTR3DQ70Z44 454 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 FUKQ8N0W3 1084 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 ADAMTS14Q8WXS8 1223 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 ELMO3Q96BJ8 720 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 MRGPRX1Q96LB2 322 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 DMAP1Q9NPF5 467 aaPredicted RBP18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 KBTBD4Q9NVX7 518 aa18.86■□□□□ 0.61
CLSTN3-214ENST00000542663 ATP8B3O60423 1300 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 NEDD8-MDP1E9PL57 170 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 TLR5O60602 858 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 BEST1O76090 585 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 FTH1P19P0C7X4 201 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 TYRP14679 529 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 ATICP31939 592 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 SLC39A14Q15043 492 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 E2F4Q16254 413 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 PNPLA1Q8N8W4 532 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 PLEKHO2Q8TD55 490 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 SMARCD1Q96GM5 515 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 USP28Q96RU2 1077 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 SMOQ99835 787 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 MED10Q9BTT4 135 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 BBS2Q9BXC9 721 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 KLF16Q9BXK1 252 aaPredicted RBP18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 SDCBP2Q9H190 292 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 TNMDQ9H2S6 317 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 VRTNQ9H8Y1 702 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 KRT82Q9NSB4 513 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 COMMD8Q9NX08 183 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 MARK1Q9P0L2 795 aa18.85■□□□□ 0.61
CLSTN3-214ENST00000542663 WASH3PC4AMC7 463 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 TBX18O95935 607 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 MAOBP27338 520 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 CASP4P49662 377 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 TRPC3Q13507 836 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 CUL4AQ13619 759 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 SDE2Q6IQ49 451 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 C19orf48Q6RUI8 117 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 TPGS1Q6ZTW0 290 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 NAXDQ8IW45 347 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 RGL4Q8IZJ4 473 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 XXYLT1Q8NBI6 393 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 SYAP1Q96A49 352 aaPredicted RBP18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 P2RY11Q96G91 374 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 FAM124BQ9H5Z6 455 aaPredicted RBP18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 CACNA2D2Q9NY47 1150 aa18.84■□□□□ 0.61
CLSTN3-214ENST00000542663 CBFA2T3O75081 653 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 NDUFS2O75306 463 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 AP1G2O75843 785 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 CISD3P0C7P0 127 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 EHHADHQ08426 723 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 GRIK2Q13002 908 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 FAM26FQ5R3K3 315 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 ACOT1Q86TX2 421 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 NELFCDQ8IXH7 590 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 SCFD1Q8WVM8 642 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 XPO6Q96QU8 1125 aaKnown RBP18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 NACA2Q9H009 215 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 CSNK1G1Q9HCP0 422 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 OSER1Q9NX31 292 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 SUSD2Q9UGT4 822 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 SMG1Q96Q15 3661 aaKnown RBP18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 NUMA1Q14980 2115 aa18.83■□□□□ 0.6
CLSTN3-214ENST00000542663 ACACAQ13085 2346 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 ZBTB24O43167 697 aaPredicted RBP18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 CCDC130P13994 396 aa18.82■□□□□ 0.6
CLSTN3-214ENST00000542663 SYT1P21579 422 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms