RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 PIP5K1AQ99755 562 aa11.52□□□□□ -0.56
CDH3-203ENST00000542274 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.52□□□□□ -0.56
CDH3-203ENST00000542274 SLITRK6Q9H5Y7 841 aa11.52□□□□□ -0.56
CDH3-203ENST00000542274 CHST12Q9NRB3 414 aa11.52□□□□□ -0.56
CDH3-203ENST00000542274 SEPT11Q9NVA2 429 aaKnown RBP11.52□□□□□ -0.56
CDH3-203ENST00000542274 EMC3Q9P0I2 261 aa11.52□□□□□ -0.56
CDH3-203ENST00000542274 CEP72Q9P209 647 aa11.52□□□□□ -0.56
CDH3-203ENST00000542274 ADAMTS1Q9UHI8 967 aa11.52□□□□□ -0.56
CDH3-203ENST00000542274 SOX13Q9UN79 622 aa11.52□□□□□ -0.56
CDH3-203ENST00000542274 ERVK-11Q9UQG0 969 aa11.52□□□□□ -0.56
CDH3-203ENST00000542274 DOCK5Q9H7D0 1870 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 A0A087X0T9 212 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 GRIN3BO60391 1043 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 FAM228BP0C875 321 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 M6PRP20645 277 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 PSMC2P35998 433 aaKnown RBP11.52□□□□□ -0.57
CDH3-203ENST00000542274 NKX2-5P52952 324 aaPredicted RBP11.52□□□□□ -0.57
CDH3-203ENST00000542274 PEX3P56589 373 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 SOX10P56693 466 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 RAB15P59190 212 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 MAPK7Q13164 816 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 PKN2Q16513 984 aaKnown RBP11.52□□□□□ -0.57
CDH3-203ENST00000542274 PLA2G4FQ68DD2 849 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 RNF207Q6ZRF8 634 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 RTL10Q7L3V2 364 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 FAM178BQ8IXR5 827 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 SYTL1Q8IYJ3 562 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 PYROXD1Q8WU10 500 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 SLC35C1Q96A29 364 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 FAR2Q96K12 515 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 ASCC2Q9H1I8 757 aaPredicted RBP11.52□□□□□ -0.57
CDH3-203ENST00000542274 RUBCNLQ9H714 662 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 STOML1Q9UBI4 398 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 EDARQ9UNE0 448 aa11.52□□□□□ -0.57
CDH3-203ENST00000542274 CAPN8A6NHC0 703 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 PDXKO00764 312 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 FUCA1P04066 466 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 CAPN1P07384 714 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 XRCC5P13010 732 aaKnown RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 KRT10P13645 584 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 PON1P27169 355 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 NPEPPSP55786 919 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 C2orf54Q08AI8 447 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 MTMR1Q13613 665 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 RFTN1Q14699 578 aaPredicted RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 NFE2Q16621 373 aaPredicted RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 MAP3K21Q5TCX8 1036 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 CCDC25Q86WR0 208 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 RALGPS2Q86X27 583 aaPredicted RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 CD302Q8IX05 232 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 CAVIN3Q969G5 261 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 NLRP4Q96MN2 994 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 RAB3IPQ96QF0 476 aaPredicted RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 R3HDMLQ9H3Y0 253 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 GOLPH3Q9H4A6 298 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 PCIF1Q9H4Z3 704 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 USP29Q9HBJ7 922 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 AGO4Q9HCK5 861 aaKnown RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 CASS4Q9NQ75 786 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 ARMC1Q9NVT9 282 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 SAR1BQ9Y6B6 198 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 KIAA1217Q5T5P2 1943 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 FRMPD4Q14CM0 1322 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 ARHGEF35A5YM69 484 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 B8ZZF3 427 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 AFPP02771 609 aaKnown RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 HADHAP40939 763 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 KRT6CP48668 564 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 P2RX3P56373 397 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 CUL1Q13616 776 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 PGM5Q15124 567 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 C21orf62-AS1Q17RA5 79 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 NFRKBQ6P4R8 1299 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 ZNF720Q7Z2F6 126 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 CHPFQ8IZ52 775 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 RBM18Q96H35 190 aaKnown RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 NACC1Q96RE7 527 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 RMDN3Q96TC7 470 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 IFT22Q9H7X7 185 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 SP140LQ9H930 580 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 OLFML3Q9NRN5 406 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 PACSIN2Q9UNF0 486 aaPredicted RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 POLHQ9Y253 713 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 RPTORQ8N122 1335 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 ARHGAP10A1A4S6 786 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 LACTBL1A8MY62 500 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 CALUO43852 315 aaPredicted RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 CCNE2O96020 404 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 RETP07949 1114 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 GSTM1P09488 218 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 UCHL3P15374 230 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 ZNF3P17036 446 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 RPS3AP61247 264 aaKnown RBP11.51□□□□□ -0.57
CDH3-203ENST00000542274 BMT2Q1RMZ1 405 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 GALNTL6Q49A17 601 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 CBWD6Q4V339 395 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 CBWD3Q5JTY5 395 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 CBWD5Q5RIA9 395 aa11.51□□□□□ -0.57
CDH3-203ENST00000542274 PADI6Q6TGC4 694 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms