RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 YWHAZP63104 245 aaKnown RBP13.67□□□□□ -0.22
LDLR-203ENST00000535915 TMEM62Q0P6H9 643 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 KIZQ2M2Z5 673 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 ZNF792Q3KQV3 632 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 ZNF449Q6P9G9 518 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 NLRP9Q7RTR0 991 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 SESTD1Q86VW0 696 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 CCDC125Q86Z20 511 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 CTAGE3PQ8IX95 158 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 AGGF1Q8N302 714 aaeCLIP13.67□□□□□ -0.22
LDLR-203ENST00000535915 STAMBPL1Q96FJ0 436 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 DCTN4Q9UJW0 460 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.67□□□□□ -0.22
LDLR-203ENST00000535915 PAPSS1O43252 624 aaPredicted RBP13.67□□□□□ -0.22
LDLR-203ENST00000535915 NEFHP12036 1026 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 DCAF4L1Q3SXM0 396 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 PKDCCQ504Y2 493 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 SLC9A4Q6AI14 798 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 TMEM110Q86TL2 294 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 PRPF39Q86UA1 669 aaKnown RBP13.67□□□□□ -0.22
LDLR-203ENST00000535915 PPM1NQ8N819 430 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 C7orf31Q8N865 590 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 GPRC5AQ8NFJ5 357 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 OR6B3Q8NGW1 331 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 SLC35F5Q8WV83 523 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 APOPT1Q96IL0 206 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 ZMAT2Q96NC0 199 aaKnown RBP13.67□□□□□ -0.22
LDLR-203ENST00000535915 FAM111AQ96PZ2 611 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 TBCBQ99426 244 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 SLC4A5Q9BY07 1137 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 LRMDAQ9H2I8 198 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 ETNK2Q9NVF9 386 aa13.67□□□□□ -0.22
LDLR-203ENST00000535915 BCLAF3A2AJT9 711 aaKnown RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 C2CD2LO14523 706 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 CCND1P24385 295 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 TAF1BQ53T94 588 aaPredicted RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 MARCH8Q5T0T0 291 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 CCDC110Q8TBZ0 833 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 PTPRN2Q92932 1015 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 KHSRPQ92945 711 aaKnown RBP eCLIP13.66□□□□□ -0.22
LDLR-203ENST00000535915 TTC17Q96AE7 1141 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 RTP4Q96DX8 246 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 LPIN3Q9BQK8 851 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 TSSK1BQ9BXA7 367 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 FRMD8Q9BZ67 464 aaPredicted RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 SLC24A3Q9HC58 644 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 TUBGCP4Q9UGJ1 667 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 ZC3H7BQ9UGR2 993 aaKnown RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 ZFP69BQ9UJL9 534 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 NME7Q9Y5B8 376 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 ZNF638Q14966 1978 aaKnown RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 MDM4O15151 490 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 FAM155BO75949 473 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 ECM2O94769 699 aaPredicted RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 SETSIPP0DME0 302 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 PAX7P23759 505 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 HDAC4P56524 1084 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 SNX16P57768 344 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 CCNA1P78396 465 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 SNAPC2Q13487 334 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 ACCSLQ4AC99 568 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 PLEKHG4Q58EX7 1191 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 SLC45A4Q5BKX6 768 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 GLRA4Q5JXX5 417 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 MTDHQ86UE4 582 aaKnown RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 ZNF410Q86VK4 478 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 SLC26A11Q86WA9 606 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 RFWD2Q8NHY2 731 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 USP6NLQ92738 828 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 UTP4Q969X6 686 aaKnown RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 EMID1Q96A84 441 aaPredicted RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 ZNF670Q9BS34 389 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 PDCD11Q14690 1871 aaKnown RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 CBX6O95503 412 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 TFE3P19532 575 aaPredicted RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 CYP2F1P24903 491 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 GJA5P36382 358 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 TTC39BQ5VTQ0 682 aaPredicted RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 LRRC6Q86X45 466 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 ZNF398Q8TD17 642 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 L3MBTL3Q96JM7 780 aaPredicted RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 TRIM55Q9BYV6 548 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 IQCGQ9H095 443 aaKnown RBP13.66□□□□□ -0.22
LDLR-203ENST00000535915 NRDE2Q9H7Z3 1164 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 PNPLA8Q9NP80 782 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 RNF19AQ9NV58 838 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 TTLL3Q9Y4R7 772 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 HES2Q9Y543 173 aa13.66□□□□□ -0.22
LDLR-203ENST00000535915 A0A0G2JND7 137 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 A6NJR5 290 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 A8MXQ7 604 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 ANP32DO95626 131 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 T-ENOLP0DO92 83 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 RASSF2P50749 326 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 NEK3P51956 506 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 SLC18A2Q05940 514 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 PARP6Q2NL67 630 aa13.65□□□□□ -0.22
LDLR-203ENST00000535915 CAND1Q86VP6 1230 aaKnown RBP13.65□□□□□ -0.22
LDLR-203ENST00000535915 CLEC4CQ8WTT0 213 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms