RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 ACSL1P33121 698 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 NPTX2P47972 431 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 PEX3P56589 373 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 ASIC1P78348 528 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 CLN3Q13286 438 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 IGF2-ASQ6U949 168 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 CATSPER3Q86XQ3 398 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 LEO1Q8WVC0 666 aaPredicted RBP11.28□□□□□ -0.6
CSDE1-215ENST00000533818 SKA1Q96BD8 255 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 SGF29Q96ES7 293 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 SLC46A1Q96NT5 459 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.28□□□□□ -0.6
CSDE1-215ENST00000533818 NF1P21359 2839 aa11.28□□□□□ -0.6
CSDE1-215ENST00000533818 CITO14578 2027 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 PIRO00625 290 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 CLDN3O15551 220 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 TSPAN3O60637 253 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 CSO75390 466 aaKnown RBP11.27□□□□□ -0.61
CSDE1-215ENST00000533818 OLFM2O95897 454 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 MBL2P11226 248 aaPredicted RBP11.27□□□□□ -0.61
CSDE1-215ENST00000533818 EPHA8P29322 1005 aaPredicted RBP11.27□□□□□ -0.61
CSDE1-215ENST00000533818 TXKP42681 527 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 MATR3P43243 847 aaKnown RBP eCLIP11.27□□□□□ -0.61
CSDE1-215ENST00000533818 ARRB1P49407 418 aaPredicted RBP11.27□□□□□ -0.61
CSDE1-215ENST00000533818 ZNF132P52740 706 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 RACK1P63244 317 aaKnown RBP11.27□□□□□ -0.61
CSDE1-215ENST00000533818 MYL7Q01449 175 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 BNIP3Q12983 259 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 PDIA5Q14554 519 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 CDCP2Q5VXM1 449 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 TRIM22Q8IYM9 498 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 XPO6Q96QU8 1125 aaKnown RBP11.27□□□□□ -0.61
CSDE1-215ENST00000533818 TSPAN18Q96SJ8 248 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 TUFT1Q9NNX1 390 aa11.27□□□□□ -0.61
CSDE1-215ENST00000533818 ATXN7L1Q9ULK2 861 aaPredicted RBP11.27□□□□□ -0.61
CSDE1-215ENST00000533818 RBM19Q9Y4C8 960 aaKnown RBP11.27□□□□□ -0.61
CSDE1-215ENST00000533818 OPA1O60313 960 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 MED24O75448 989 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 BCAT1P54687 386 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 MCL1Q07820 350 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 CALCRLQ16602 461 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 TBR1Q16650 682 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 C3orf38Q5JPI3 329 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 RNF20Q5VTR2 975 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 PIK3AP1Q6ZUJ8 805 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 KANSL1Q7Z3B3 1105 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 SPATA2LQ8IUW3 424 aaPredicted RBP11.26□□□□□ -0.61
CSDE1-215ENST00000533818 BBS7Q8IWZ6 715 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 SPATA20Q8TB22 786 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 ZNF564Q8TBZ8 553 aaPredicted RBP11.26□□□□□ -0.61
CSDE1-215ENST00000533818 FAM212AQ96EL1 285 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 RWDD1Q9H446 243 aaPredicted RBP11.26□□□□□ -0.61
CSDE1-215ENST00000533818 KMT5AQ9NQR1 393 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 TMPRSS4Q9NRS4 437 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 GEMIN8Q9NWZ8 242 aaKnown RBP11.26□□□□□ -0.61
CSDE1-215ENST00000533818 ARHGAP28Q9P2N2 729 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 GTF3C4Q9UKN8 822 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 KCNJ14Q9UNX9 436 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 SATB2Q9UPW6 733 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 SH3BP1Q9Y3L3 701 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 OTOGQ6ZRI0 2925 aa11.26□□□□□ -0.61
CSDE1-215ENST00000533818 NEDD8-MDP1E9PL57 170 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 CACNG3O60359 315 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 SEMA4FO95754 770 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 OAS1P00973 400 aaKnown RBP11.25□□□□□ -0.61
CSDE1-215ENST00000533818 TYRP14679 529 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 CASRP41180 1078 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 PPP3CCP48454 512 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 TAF6P49848 677 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 COPAP53621 1224 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 USP46P62068 366 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 SSRP1Q08945 709 aaKnown RBP11.25□□□□□ -0.61
CSDE1-215ENST00000533818 STRN3Q13033 797 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 ENOX2Q16206 610 aaKnown RBP11.25□□□□□ -0.61
CSDE1-215ENST00000533818 PROX2Q3B8N5 592 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 ADCK5Q3MIX3 580 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 SFMBT2Q5VUG0 894 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 CRYBG3Q68DQ2 2970 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 ZNF787Q6DD87 383 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 JADE1Q6IE81 842 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 TICAM1Q8IUC6 712 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 SRRM1Q8IYB3 904 aaKnown RBP11.25□□□□□ -0.61
CSDE1-215ENST00000533818 BRF1Q92994 677 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 ACBD6Q9BR61 282 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 ORAI3Q9BRQ5 295 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 BBS2Q9BXC9 721 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 TRIM9Q9C026 710 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 NCOA5Q9HCD5 579 aaKnown RBP11.25□□□□□ -0.61
CSDE1-215ENST00000533818 GDF3Q9NR23 364 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 LRWD1Q9UFC0 647 aa11.25□□□□□ -0.61
CSDE1-215ENST00000533818 NPC1O15118 1278 aa11.24□□□□□ -0.61
CSDE1-215ENST00000533818 WNT1P04628 370 aa11.24□□□□□ -0.61
CSDE1-215ENST00000533818 ACAT1P24752 427 aaKnown RBP11.24□□□□□ -0.61
CSDE1-215ENST00000533818 DGKGP49619 791 aa11.24□□□□□ -0.61
CSDE1-215ENST00000533818 DUSP3P51452 185 aaPredicted RBP11.24□□□□□ -0.61
CSDE1-215ENST00000533818 CCT2P78371 535 aaKnown RBP11.24□□□□□ -0.61
CSDE1-215ENST00000533818 DAB2P98082 770 aa11.24□□□□□ -0.61
CSDE1-215ENST00000533818 CFAP221Q4G0U5 840 aa11.24□□□□□ -0.61
CSDE1-215ENST00000533818 INTS6LQ5JSJ4 861 aaKnown RBP11.24□□□□□ -0.61
CSDE1-215ENST00000533818 FAM177A1Q8N128 213 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms