RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 LCLAT1Q6UWP7 414 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 HTR3DQ70Z44 454 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 CPA6Q8N4T0 437 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 ZNF276Q8N554 614 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 CCDC150Q8NCX0 1101 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 CD101Q93033 1021 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 NT5C1BQ96P26 610 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 ULBP1Q9BZM6 244 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 FBXO44Q9H4M3 255 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 TLR8Q9NR97 1041 aaKnown RBP11.22□□□□□ -0.61
CD44-227ENST00000528086 CYTH4Q9UIA0 394 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.22□□□□□ -0.61
CD44-227ENST00000528086 LAMA1P25391 3075 aa11.22□□□□□ -0.61
CD44-227ENST00000528086 A0A0A0MRY4 1105 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 XPO1O14980 1071 aaKnown RBP11.21□□□□□ -0.61
CD44-227ENST00000528086 STC2O76061 302 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 GNA14O95837 355 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 FYNP06241 537 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 IRF1P10914 325 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 VDRP11473 427 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 TBXAS1P24557 533 aaPredicted RBP11.21□□□□□ -0.61
CD44-227ENST00000528086 PON1P27169 355 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 PLA2G4AP47712 749 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 PXNP49023 591 aaPredicted RBP11.21□□□□□ -0.61
CD44-227ENST00000528086 RPL34P49207 117 aaKnown RBP11.21□□□□□ -0.61
CD44-227ENST00000528086 PDE6CP51160 858 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 CCR3P51677 355 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 GCNT1Q02742 428 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 LRRC32Q14392 662 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 CNGA2Q16280 664 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 KLHDC10Q6PID8 442 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 C1orf228Q6PIY5 440 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 PPM1KQ8N3J5 372 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 SYNPOQ8N3V7 929 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 TTC39CQ8N584 583 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 MLKLQ8NB16 471 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 RBBP8NLQ8NC74 664 aaPredicted RBP11.21□□□□□ -0.61
CD44-227ENST00000528086 CLEC4CQ8WTT0 213 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 IER2Q9BTL4 223 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 EPC1Q9H2F5 836 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 ZDHHC4Q9NPG8 344 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 SAMSN1Q9NSI8 373 aaKnown RBP11.21□□□□□ -0.61
CD44-227ENST00000528086 CLIC5Q9NZA1 410 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.21□□□□□ -0.61
CD44-227ENST00000528086 PCDHB4Q9Y5E5 795 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 PCDHGA2Q9Y5H1 932 aa11.21□□□□□ -0.61
CD44-227ENST00000528086 RALGAPA1Q6GYQ0 2036 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 YJEFN3A6XGL0 299 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 E7ENQ6 273 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 GFRA2O00451 464 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 PIK3R2O00459 728 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 HOXC11O43248 304 aaPredicted RBP11.2□□□□□ -0.62
CD44-227ENST00000528086 NFATC1O95644 943 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 LMNAP02545 664 aaKnown RBP11.2□□□□□ -0.62
CD44-227ENST00000528086 PAEPP09466 180 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 CD19P15391 556 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 DRD1P21728 446 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 HOXA6P31267 233 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 KIR2DL1P43626 348 aaPredicted RBP11.2□□□□□ -0.62
CD44-227ENST00000528086 RGS7P49802 495 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 TKTL1P51854 596 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 BCAT1P54687 386 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 ADIGQ0VDE8 80 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 KCNMA1Q12791 1236 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 GRSF1Q12849 480 aaKnown RBP eCLIP11.2□□□□□ -0.62
CD44-227ENST00000528086 SGO2Q562F6 1265 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 HSP90AA4PQ58FG1 418 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 HEATR6Q6AI08 1181 aaKnown RBP11.2□□□□□ -0.62
CD44-227ENST00000528086 DENND1BQ6P3S1 775 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 TRIM65Q6PJ69 517 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 MIB1Q86YT6 1006 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 RPLP0P6Q8NHW5 317 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 USP33Q8TEY7 942 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 KCTD13Q8WZ19 329 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 SECISBP2LQ93073 1101 aaKnown RBP11.2□□□□□ -0.62
CD44-227ENST00000528086 NUP62CLQ9H1M0 184 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 NAGPAQ9UK23 515 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 CLEC4EQ9ULY5 219 aa11.2□□□□□ -0.62
CD44-227ENST00000528086 ADAM23O75077 832 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 TULP3O75386 442 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 ZBED1O96006 694 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 CISD3P0C7P0 127 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 PNMA6AP0CW24 399 aaPredicted RBP11.19□□□□□ -0.62
CD44-227ENST00000528086 ADH5P11766 374 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 ATP5C1P36542 298 aaKnown RBP11.19□□□□□ -0.62
CD44-227ENST00000528086 GPD2P43304 727 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 DAOAP59103 153 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 BST2Q10589 180 aaKnown RBP11.19□□□□□ -0.62
CD44-227ENST00000528086 C10orf120Q5SQS8 335 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 TMEM92Q6UXU6 159 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 TOGARAM2Q6ZUX3 1019 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 DDX42Q86XP3 938 aaKnown RBP eCLIP11.19□□□□□ -0.62
CD44-227ENST00000528086 WDTC1Q8N5D0 677 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 NAT16Q8N8M0 369 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 HSD3B7Q9H2F3 369 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 SEMA4AQ9H3S1 761 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 CD248Q9HCU0 757 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 PARD6AQ9NPB6 346 aa11.19□□□□□ -0.62
CD44-227ENST00000528086 UBE2TQ9NPD8 197 aaPredicted RBP11.19□□□□□ -0.62
CD44-227ENST00000528086 SPHK2Q9NRA0 654 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms