RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ANP32DO95626 131 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 ZNF286BP0CG31 522 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 T-ENOLP0DO92 83 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 ZNF792Q3KQV3 632 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 MAMDC4Q6UXC1 1216 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 ACOT1Q86TX2 421 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 LRRC6Q86X45 466 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 CDKL3Q8IVW4 592 aaPredicted RBP22.07■■□□□ 1.12
VPS28-205ENST00000526204 MCUQ8NE86 351 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 KHSRPQ92945 711 aaKnown RBP eCLIP22.07■■□□□ 1.12
VPS28-205ENST00000526204 CDCA5Q96FF9 252 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 TSSK1BQ9BXA7 367 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 TUT1Q9H6E5 874 aaKnown RBP22.07■■□□□ 1.12
VPS28-205ENST00000526204 ETNK2Q9NVF9 386 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 ZC3H7BQ9UGR2 993 aaKnown RBP22.07■■□□□ 1.12
VPS28-205ENST00000526204 L3MBTL1Q9Y468 752 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 SNX9Q9Y5X1 595 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 A8MUI8 341 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 AVILO75366 819 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 ZFXP17010 805 aaPredicted RBP22.06■■□□□ 1.12
VPS28-205ENST00000526204 CCNA1P78396 465 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 TAF1BQ53T94 588 aaPredicted RBP22.06■■□□□ 1.12
VPS28-205ENST00000526204 UNC93AQ86WB7 457 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 SCUBE3Q8IX30 993 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 UTP4Q969X6 686 aaKnown RBP22.06■■□□□ 1.12
VPS28-205ENST00000526204 TUBB6Q9BUF5 446 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 GPATCH2LQ9NWQ4 482 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 IL1BP01584 269 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 PRKCHP24723 683 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 LRRC52Q8N7C0 313 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 CFAP36Q96G28 342 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 MRPL45Q9BRJ2 306 aaKnown RBP22.06■■□□□ 1.12
VPS28-205ENST00000526204 POPDC2Q9HBU9 364 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 TTLL3Q9Y4R7 772 aa22.06■■□□□ 1.12
VPS28-205ENST00000526204 PAPSS1O43252 624 aaPredicted RBP22.05■■□□□ 1.12
VPS28-205ENST00000526204 SNRPAP09012 282 aaKnown RBP22.05■■□□□ 1.12
VPS28-205ENST00000526204 PYGBP11216 843 aa22.05■■□□□ 1.12
VPS28-205ENST00000526204 PTPN9P43378 593 aa22.05■■□□□ 1.12
VPS28-205ENST00000526204 PLEKHG4Q58EX7 1191 aa22.05■■□□□ 1.12
VPS28-205ENST00000526204 SYCP2LQ5T4T6 812 aa22.05■■□□□ 1.12
VPS28-205ENST00000526204 CLNKQ7Z7G1 428 aa22.05■■□□□ 1.12
VPS28-205ENST00000526204 GPRC5AQ8NFJ5 357 aa22.05■■□□□ 1.12
VPS28-205ENST00000526204 SLC7A6OSQ96CW6 309 aaPredicted RBP22.05■■□□□ 1.12
VPS28-205ENST00000526204 IQCGQ9H095 443 aaKnown RBP22.05■■□□□ 1.12
VPS28-205ENST00000526204 LNPEPQ9UIQ6 1025 aa22.05■■□□□ 1.12
VPS28-205ENST00000526204 C15orf41Q9Y2V0 281 aa22.05■■□□□ 1.12
VPS28-205ENST00000526204 DICER1Q9UPY3 1922 aaKnown RBP22.05■■□□□ 1.12
VPS28-205ENST00000526204 MCM3APO60318 1980 aa22.05■■□□□ 1.12
VPS28-205ENST00000526204 APRTP07741 180 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 NEFHP12036 1026 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 NR2C2P49116 596 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 HDAC4P56524 1084 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 GRIK4Q16099 956 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 ARHGAP17Q68EM7 881 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 ARCQ7LC44 396 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 MTDHQ86UE4 582 aaKnown RBP22.04■■□□□ 1.12
VPS28-205ENST00000526204 CAND1Q86VP6 1230 aaKnown RBP22.04■■□□□ 1.12
VPS28-205ENST00000526204 FAM111AQ96PZ2 611 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 C12orf65Q9H3J6 166 aaKnown RBP22.04■■□□□ 1.12
VPS28-205ENST00000526204 NRDE2Q9H7Z3 1164 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 KLF11O14901 512 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 C1QAP02745 245 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 SCNN1AP37088 669 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 SNAPC2Q13487 334 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 DPYSL2Q16555 572 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 CA9Q16790 459 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 ACCSLQ4AC99 568 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 TLDC1Q6P9B6 456 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 ZNF449Q6P9G9 518 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 PRPF39Q86UA1 669 aaKnown RBP22.04■■□□□ 1.12
VPS28-205ENST00000526204 CTAGE3PQ8IX95 158 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 VPS52Q8N1B4 723 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 PPM1NQ8N819 430 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 BEST2Q8NFU1 509 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 PTPRN2Q92932 1015 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 RSRC1Q96IZ7 334 aaKnown RBP22.04■■□□□ 1.12
VPS28-205ENST00000526204 FAM49BQ9NUQ9 324 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 GEMIN8Q9NWZ8 242 aaKnown RBP22.04■■□□□ 1.12
VPS28-205ENST00000526204 DCTN4Q9UJW0 460 aa22.04■■□□□ 1.12
VPS28-205ENST00000526204 RPL26L1Q9UNX3 145 aaKnown RBP22.04■■□□□ 1.12
VPS28-205ENST00000526204 MTO1Q9Y2Z2 717 aaKnown RBP22.04■■□□□ 1.12
VPS28-205ENST00000526204 A6NJR5 290 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 COPEO14579 308 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 GCATO75600 419 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 NPTXRO95502 500 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 IBSPP21815 317 aaPredicted RBP22.03■■□□□ 1.12
VPS28-205ENST00000526204 CYP2F1P24903 491 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 PTPN4P29074 926 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 ADORA2AP29274 412 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 ELF1P32519 619 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 PRKD1Q15139 912 aaPredicted RBP22.03■■□□□ 1.12
VPS28-205ENST00000526204 PPP6R3Q5H9R7 873 aaPredicted RBP22.03■■□□□ 1.12
VPS28-205ENST00000526204 MARCH8Q5T0T0 291 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 TBC1D10AQ9BXI6 508 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 CNTN3Q9P232 1028 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 TRIM49D1C9J1S8 452 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 ECM2O94769 699 aaPredicted RBP22.03■■□□□ 1.12
VPS28-205ENST00000526204 CDC42EP1Q00587 391 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 OVGP1Q12889 678 aa22.03■■□□□ 1.12
VPS28-205ENST00000526204 ZBTB6Q15916 424 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms