RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 LACTBL1A8MY62 500 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 RHOBTB1O94844 696 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 MICAL2O94851 1124 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 RPA3P35244 121 aaPredicted RBP13.08□□□□□ -0.32
USP53-209ENST00000514665 NNMTP40261 264 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 ABCG1P45844 678 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 PLOD1Q02809 727 aaPredicted RBP13.08□□□□□ -0.32
USP53-209ENST00000514665 MGAT5Q09328 741 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 MAMLD1Q13495 774 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 DGKZQ13574 1117 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 NPY5RQ15761 445 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 KCNT2Q6UVM3 1135 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 LINC00523Q86TU6 105 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 KATNAL2Q8IYT4 538 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 ZCCHC9Q8N567 271 aaKnown RBP13.08□□□□□ -0.32
USP53-209ENST00000514665 DACH2Q96NX9 599 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 SLCO1B3Q9NPD5 702 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 ACOT9Q9Y305 439 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 GOLGA8TH3BQL2 631 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 NOL4O94818 638 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 FSBPO95073 299 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 TGFB3P10600 412 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 TKTL1P51854 596 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 DAB2P98082 770 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 POU6F1Q14863 301 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 TBCCQ15814 346 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 PTRHD1Q6GMV3 140 aaKnown RBP13.08□□□□□ -0.32
USP53-209ENST00000514665 CNBD2Q96M20 576 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 SH3GL3Q99963 347 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 MUC3BQ9H195 1237 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 ERVK-5Q9HDB9 667 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 PKD2L2Q9NZM6 624 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 PCYOX1Q9UHG3 505 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 PCDHGB4Q9UN71 923 aa13.08□□□□□ -0.32
USP53-209ENST00000514665 HNRNPCP07910 306 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP53-209ENST00000514665 IRF1P10914 325 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 SERPINB8P50452 374 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 STX5Q13190 355 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 ZRANB3Q5FWF4 1079 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 SNX30Q5VWJ9 437 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 SEL1L3Q68CR1 1132 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 C16orf46Q6P387 395 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 IZUMO2Q6UXV1 221 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 DEFB107AQ8IZN7 70 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 APOL5Q9BWW9 433 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 BANF1O75531 89 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 HMGCRP04035 888 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 PYGLP06737 847 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 THRAP10827 490 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 TNFRSF8P28908 595 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 SLC26A2P50443 739 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 ZCWPW2Q504Y3 356 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 IYDQ6PHW0 289 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 C15orf52Q6ZUT6 534 aaKnown RBP13.07□□□□□ -0.32
USP53-209ENST00000514665 EXOC3L1Q86VI1 746 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 PALB2Q86YC2 1186 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 SLC9A9Q8IVB4 645 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 DNERQ8NFT8 737 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 PPP1R13LQ8WUF5 828 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 CKAP2Q8WWK9 683 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 EFCAB1Q9HAE3 211 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 TAGLN3Q9UI15 199 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 CAMTA1Q9Y6Y1 1673 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 WDR27A2RRH5 827 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 TMEM247A6NEH6 219 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 KRT16P08779 473 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 GLRA2P23416 452 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 EIF4BP23588 611 aaKnown RBP13.07□□□□□ -0.32
USP53-209ENST00000514665 MGAT1P26572 445 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 KCNJ2P63252 427 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 DSG1Q02413 1049 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 ADIGQ0VDE8 80 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP53-209ENST00000514665 REPS2Q8NFH8 660 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 LRRN4Q8WUT4 740 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 FHDC1Q9C0D6 1143 aaPredicted RBP13.07□□□□□ -0.32
USP53-209ENST00000514665 ATXN3LQ9H3M9 355 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 MYO5BQ9ULV0 1848 aa13.07□□□□□ -0.32
USP53-209ENST00000514665 MLH1P40692 756 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 ZNF157P51786 506 aaPredicted RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 BST2Q10589 180 aaKnown RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 UGCGQ16739 394 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 ZC3H15Q8WU90 426 aaKnown RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 HIC2Q96JB3 615 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 GPR63Q9BZJ6 419 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 SPON1Q9HCB6 807 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 SNX13Q9Y5W8 968 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 ARHGAP23Q9P227 1491 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 APOC4-APOC2K7ER74 178 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 OPLAHO14841 1288 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 RGL2O15211 777 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 ENDOD1O94919 500 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 F9P00740 461 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 APOC2P02655 101 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 APOA4P06727 396 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 CETPP11597 493 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 KDELR1P24390 212 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 GRK2P25098 689 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 MAP4P27816 1152 aaKnown RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 AKT1P31749 480 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms