RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CLK4Q9HAZ1 481 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 MLXQ9UH92 298 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 ACOT9Q9Y305 439 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 SNX9Q9Y5X1 595 aa11.56□□□□□ -0.56
LIMCH1-217ENST00000512946 TBX3O15119 743 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 MGRN1O60291 552 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 NR3C2P08235 984 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 CAPGP40121 348 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 BCAMP50895 628 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 OVGP1Q12889 678 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 OTOAQ7RTW8 1153 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 RAB43Q86YS6 212 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 TPCN2Q8NHX9 752 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 COA7Q96BR5 231 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF496Q96IT1 587 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 PI4KBQ9UBF8 816 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 XDHP47989 1333 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 CCDC154A6NI56 674 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 ARHGEF33A8MVX0 844 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 CCNKO75909 580 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 TPBGLP0DKB5 382 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 MUTP22033 750 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 POU1F1P28069 291 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 CDC42P60953 191 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 SMCO1Q147U7 214 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 PDK2Q15119 407 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 METTL16Q86W50 562 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 KBTBD2Q8IY47 623 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 SPAG16Q8N0X2 631 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 FBXW8Q8N3Y1 598 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 FEZF2Q8TBJ5 459 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 BLOC1S5Q8TDH9 187 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 WDR41Q9HAD4 459 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 WWOXQ9NZC7 414 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 ANAPC2Q9UJX6 822 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 ANKRD6Q9Y2G4 727 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF804BA4D1E1 1349 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 PLXNC1O60486 1568 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 CYP26A1O43174 497 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 CST8O60676 142 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 TMCC2O75069 709 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 UNC5CO95185 931 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 BMP10O95393 424 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 NCAM1P13591 858 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 FBLN1P23142 703 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 NFX1Q12986 1120 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 TXNRD1Q16881 649 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 NEDD1Q8NHV4 660 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 LRRC20Q8TCA0 184 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 FAM118BQ9BPY3 351 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 SPON2Q9BUD6 331 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 AGO2Q9UKV8 859 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 PCDHA6Q9UN73 950 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 PCDHA8Q9Y5H6 950 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 PCP4L1A6NKN8 68 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 ALDH1A3P47895 512 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 PPP3CCP48454 512 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 BST2Q10589 180 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 DPYDQ12882 1025 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 CCNG2Q16589 344 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 AGKQ53H12 422 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 STOX1Q6ZVD7 989 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 UTP15Q8TED0 518 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 DPF2Q92785 391 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 TP53INP1Q96A56 240 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 ACSBG1Q96GR2 724 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 TTYH1Q9H313 450 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 SPEF1Q9Y4P9 236 aa11.55□□□□□ -0.56
LIMCH1-217ENST00000512946 NOS1APO75052 506 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 LDOC1O95751 146 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 A1BGP04217 495 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 PRR29P0C7W0 189 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 LPIN1Q14693 890 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 TMEM179Q6ZVK1 233 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 FAM228AQ86W67 206 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 FLAD1Q8NFF5 587 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 TSPAN18Q96SJ8 248 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 ADI1Q9BV57 179 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 TBC1D30Q9Y2I9 924 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 PCDHGA10Q9Y5H3 936 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 V9GYQ6 96 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 IQGAP2Q13576 1575 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 ADGRA2Q96PE1 1338 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 APOL3O95236 402 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF682O95780 498 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 ACAT1P24752 427 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 SMIM11AP58511 58 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 AP3S2P59780 193 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 SRP54P61011 504 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 BNIP2Q12982 314 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 SWI5Q1ZZU3 235 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 KYAT3Q6YP21 454 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 DHDDSQ86SQ9 333 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 ZC3H10Q96K80 434 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 PAFAH2Q99487 392 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 KLF6Q99612 283 aaPredicted RBP11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 ABCB10Q9NRK6 738 aa11.54□□□□□ -0.56
LIMCH1-217ENST00000512946 RPS6KB2Q9UBS0 482 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms