RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 VDRP11473 427 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 LAMC2Q13753 1193 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 PPP6R3Q5H9R7 873 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 FASTKD5Q7L8L6 764 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 TTC30AQ86WT1 665 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 CMASQ8NFW8 434 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 LENG1Q96BZ8 264 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 CCDC189A1A4V9 331 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 APOC4-APOC2K7ER74 178 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 KIF1CO43896 1103 aaKnown RBP17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 APOC2P02655 101 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 PYGBP11216 843 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 CALB2P22676 271 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 ARL4CP56559 192 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 CCDC142Q17RM4 750 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 MARCH8Q5T0T0 291 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 ANO7Q6IWH7 933 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 FNIP1Q8TF40 1166 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 WDR60Q8WVS4 1066 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 ASNSD1Q9NWL6 643 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 PSMC3IPQ9P2W1 217 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 GJD2Q9UKL4 321 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 STARD13Q9Y3M8 1113 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 MYO18AQ92614 2054 aaKnown RBP17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 C2CD4BA6NLJ0 364 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 CYB561D2O14569 222 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 UGT1A9O60656 530 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 SMNDC1O75940 238 aaKnown RBP eCLIP17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 PDGFRBP09619 1106 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 LINGO3P0C6S8 592 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 AKAP5P24588 427 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 ZNF143P52747 638 aaPredicted RBP17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 TNFAIP2Q03169 654 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 DPYSL3Q14195 570 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 KRT81Q14533 505 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 GRIK4Q16099 956 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 LRRC36Q1X8D7 754 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 CLNKQ7Z7G1 428 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 LINC01465Q8N7H1 131 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 STK32AQ8WU08 396 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 SERAC1Q96JX3 654 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 CADM1Q9BY67 442 aaKnown RBP17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 ASB7Q9H672 318 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 UGT1A7Q9HAW7 530 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 UGT1A10Q9HAW8 530 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 UGT1A8Q9HAW9 530 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 WDR35Q9P2L0 1181 aa17.19■□□□□ 0.34
CCDC88B-210ENST00000494566 HMGCRP04035 888 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 GMPRP36959 345 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 ELK3P41970 407 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 ROR1Q01973 937 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 KDSRQ06136 332 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 FAAP100Q0VG06 881 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 CCDC14Q49A88 953 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 FYB2Q5VWT5 728 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 RINLQ6ZS11 566 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 ZCCHC23Q6ZST2 131 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 SESTD1Q86VW0 696 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 VPS52Q8N1B4 723 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 NT5C1AQ9BXI3 368 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 FOXP3Q9BZS1 431 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 LRMDAQ9H2I8 198 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 KLK14Q9P0G3 267 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 DLGAP2Q9P1A6 1054 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 WASF2Q9Y6W5 498 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 PRPSAP2O60256 369 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 GABBR2O75899 941 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 SNAI1O95863 264 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 RBP5P82980 135 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 ZNF792Q3KQV3 632 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 PRAMEF19Q5SWL8 479 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 GPRC5AQ8NFJ5 357 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 FAM172AQ8WUF8 416 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 MCUR1Q96AQ8 359 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 OSMRQ99650 979 aa17.18■□□□□ 0.34
CCDC88B-210ENST00000494566 PDHXO00330 501 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 GYG2O15488 501 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 TYROBPO43914 113 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 LPXNO60711 386 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 ENO1P06733 434 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 P4HA1P13674 534 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 YBX3P16989 372 aaKnown RBP eCLIP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 SMPD1P17405 629 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 EPHX2P34913 555 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 GABRB2P47870 512 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 YARSP54577 528 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 GEMIN4P57678 1058 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 TAZQ16635 292 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 TMEM154Q6P9G4 183 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 PRPF39Q86UA1 669 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 AGGF1Q8N302 714 aaeCLIP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 PPM1NQ8N819 430 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 TTC13Q8NBP0 860 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 SPDYE1Q8NFV5 336 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 PPTC7Q8NI37 304 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 SLC10A4Q96EP9 437 aa17.17■□□□□ 0.34
CCDC88B-210ENST00000494566 TMEM120AQ9BXJ8 343 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms