RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CLIC5Q9NZA1 410 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 ANGPTL3Q9Y5C1 460 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 LACTBL1A8MY62 500 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 FLOT2Q14254 428 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 KLC3Q6P597 504 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 TRIM67Q6ZTA4 783 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 ZNF483Q8TF39 744 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 IFT43Q96FT9 208 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 CATSPER2Q96P56 530 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 APPL1Q9UKG1 709 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 PCDHA3Q9Y5H8 950 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 C5orf60A6NFR6 353 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 RBAK-RBAKDNI3L0D1 243 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 NOL4O94818 638 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 CCNG2Q16589 344 aa16.86■□□□□ 0.29
CCDC88B-209ENST00000494080 BTNL10A8MVZ5 291 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 FOXO6A8MYZ6 492 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 HOXD10P28358 340 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 TNFSF9P41273 254 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 OR1G1P47890 313 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 RPS6KA3P51812 740 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 TREML2Q5T2D2 321 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 GLB1LQ6UWU2 654 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 SHC3Q92529 594 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 EZH1Q92800 747 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 TLCD1Q96CP7 247 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 PABPC5Q96DU9 382 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 DCLK3Q9C098 648 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 PCYOX1Q9UHG3 505 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 TSPAN16Q9UKR8 245 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 ARFGEF2Q9Y6D5 1785 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 F8VP50 259 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 STRNO43815 780 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 LSM8O95777 96 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 PAEPP09466 180 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 SSTR1P30872 391 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 CAPSQ13938 189 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 PARP6Q2NL67 630 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 ECHDC2Q86YB7 292 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 FAM71AQ8IYT1 594 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 NDNQ99608 321 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 TIMM13Q9Y5L4 95 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 PYGBP11216 843 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 CHKAP35790 457 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 NUMBP49757 651 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 C6orf89Q6UWU4 347 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 HASPINQ8TF76 798 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 CNPY3Q9BT09 278 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 ARHGAP26Q9UNA1 814 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 PLIN4Q96Q06 1357 aa16.85■□□□□ 0.29
CCDC88B-209ENST00000494080 STIP1P31948 543 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 PNPLA4P41247 253 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 LRRC8EQ6NSJ5 796 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 OXNAD1Q96HP4 312 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 DMAP1Q9NPF5 467 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 AURKCQ9UQB9 309 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 LRRC37A3O60309 1634 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 MAP4P27816 1152 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 TEDDM1Q5T9Z0 273 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 TTC39BQ5VTQ0 682 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 TDRD10Q5VZ19 366 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 ZNF572Q7Z3I7 529 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 C3orf70A6NLC5 250 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 SPATA31C2B4DYI2 1134 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 CYB561D2O14569 222 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 PLA2G6O60733 806 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 PIGWQ7Z7B1 504 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 POU5F2Q8N7G0 328 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 NR2E1Q9Y466 385 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 SNED1Q8TER0 1413 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 LGALS2P05162 132 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 SP100P23497 879 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 ACAT1P24752 427 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 MARSP56192 900 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 FMO1Q01740 532 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 MCL1Q07820 350 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 KIF19Q2TAC6 998 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 L3MBTL3Q96JM7 780 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 C20orf96Q9NUD7 363 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 BTBD7Q9P203 1132 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 KIAA1257Q9ULG3 409 aa16.84■□□□□ 0.29
CCDC88B-209ENST00000494080 NUDT2P50583 147 aa16.83■□□□□ 0.29
CCDC88B-209ENST00000494080 PPIDQ08752 370 aaKnown RBP16.83■□□□□ 0.29
CCDC88B-209ENST00000494080 FASTKD1Q53R41 847 aaKnown RBP16.83■□□□□ 0.29
CCDC88B-209ENST00000494080 FBXO47Q5MNV8 452 aa16.83■□□□□ 0.29
CCDC88B-209ENST00000494080 PYDC1Q8WXC3 89 aa16.83■□□□□ 0.29
CCDC88B-209ENST00000494080 MRPL1Q9BYD6 325 aaKnown RBP16.83■□□□□ 0.29
CCDC88B-209ENST00000494080 SLIT2O94813 1529 aa16.83■□□□□ 0.29
CCDC88B-209ENST00000494080 SCN11AQ9UI33 1791 aa16.83■□□□□ 0.29
CCDC88B-209ENST00000494080 MEI4A8MW99 385 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 PGM3O95394 542 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 STMN1P16949 149 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 RGS2P41220 211 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 JAG1P78504 1218 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 EFTUD2Q15029 972 aaKnown RBP eCLIP16.83■□□□□ 0.286e-8■■■■□ 22.8
CCDC88B-209ENST00000494080 OASLQ15646 514 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 ATP13A4Q4VNC1 1196 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 FAM117BQ6P1L5 589 aa16.83■□□□□ 0.28
CCDC88B-209ENST00000494080 CCDC90BQ9GZT6 254 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms