RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 KLHL2O95198 593 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 CFBP00751 764 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 SNRPAP09012 282 aaKnown RBP12.13□□□□□ -0.47
HDAC4-210ENST00000493582 ARP10275 920 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 RXRGP48443 463 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 RELAQ04206 551 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 KCNT1Q5JUK3 1230 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 BORAQ6PGQ7 559 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 C12orf56Q8IXR9 622 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 NDUFAF2Q8N183 169 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 ARL10Q8N8L6 244 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 PIWIL2Q8TC59 973 aaKnown RBP12.13□□□□□ -0.47
HDAC4-210ENST00000493582 KIFC3Q9BVG8 833 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 BRD8Q9H0E9 1235 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 KCND2Q9NZV8 630 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 THEGQ9P2T0 379 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 HERC5Q9UII4 1024 aaKnown RBP12.13□□□□□ -0.47
HDAC4-210ENST00000493582 ZBTB21Q9ULJ3 1066 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 DAGLAQ9Y4D2 1042 aa12.13□□□□□ -0.47
HDAC4-210ENST00000493582 CST8O60676 142 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 SERPINB7O75635 380 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 KRT37O76014 449 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 BPGMP07738 259 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 HALP42357 657 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 GJA8P48165 433 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 NOMO3P69849 1222 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 OGDHQ02218 1023 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 LPCAT2Q7L5N7 544 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 SLF2Q8IX21 1173 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 ALDH16A1Q8IZ83 802 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 KCTD17Q8N5Z5 321 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 MCEEQ96PE7 176 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 CCT7Q99832 543 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 THAP1Q9NVV9 213 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 SELENONQ9NZV5 590 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 IP6K2Q9UHH9 426 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 SORCS3Q9UPU3 1222 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 AGTPBP1Q9UPW5 1226 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 CDK5RAP2Q96SN8 1893 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 DCXO43602 365 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 ECE1P42892 770 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 RARS2Q5T160 578 aaKnown RBP12.12□□□□□ -0.47
HDAC4-210ENST00000493582 MROH9Q5TGP6 573 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 C16orf46Q6P387 395 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 ATG14Q6ZNE5 492 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 MAVSQ7Z434 540 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 LILRA2Q8N149 483 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 HSPH1Q92598 858 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 NLRP4Q96MN2 994 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 PLGRKTQ9HBL7 147 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 C6orf203Q9P0P8 240 aaPredicted RBP12.12□□□□□ -0.47
HDAC4-210ENST00000493582 ITGA11Q9UKX5 1188 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 EFR3BQ9Y2G0 817 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 ASTN2O75129 1339 aaPredicted RBP12.12□□□□□ -0.47
HDAC4-210ENST00000493582 TGFBIQ15582 683 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 PLA2G4FQ68DD2 849 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 CPNE9Q8IYJ1 553 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 TSPAN14Q8NG11 270 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 ZNF577Q9BSK1 485 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 DCUN1D5Q9BTE7 237 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 ARMC7Q9H6L4 198 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 PARVAQ9NVD7 372 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 PNPOQ9NVS9 261 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 TEX264Q9Y6I9 313 aa12.12□□□□□ -0.47
HDAC4-210ENST00000493582 MYH9P35579 1960 aaKnown RBP12.11□□□□□ -0.47
HDAC4-210ENST00000493582 HTR3EA5X5Y0 456 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 FBP2O00757 339 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 XPOTO43592 962 aaKnown RBP12.11□□□□□ -0.47
HDAC4-210ENST00000493582 CCDC92Q53HC0 331 aaPredicted RBP12.11□□□□□ -0.47
HDAC4-210ENST00000493582 PDPK2PQ6A1A2 396 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 TATDN1Q6P1N9 297 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 TMEM270Q6UE05 265 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 CROCCP3Q8IVE0 287 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 RNF148Q8N7C7 305 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 GSDMBQ8TAX9 411 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 C1orf112Q9NSG2 853 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 SPATA7Q9P0W8 599 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 SMCHD1A6NHR9 2005 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 TMEM191CA6NGB0 347 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 STAMBPO95630 424 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 TMEM191BP0C7N4 346 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 IDO1P14902 403 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 CDK9P50750 372 aaKnown RBP12.11□□□□□ -0.47
HDAC4-210ENST00000493582 RPL10AP62906 217 aaKnown RBP12.11□□□□□ -0.47
HDAC4-210ENST00000493582 PFKPQ01813 784 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 GCNT1Q02742 428 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 NRF1Q16656 503 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 FASTKD1Q53R41 847 aaKnown RBP12.11□□□□□ -0.47
HDAC4-210ENST00000493582 TMEM53Q6P2H8 277 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 DQX1Q8TE96 717 aaKnown RBP12.11□□□□□ -0.47
HDAC4-210ENST00000493582 CMTM5Q96DZ9 223 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 MAN1C1Q9NR34 630 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 SMYD2Q9NRG4 433 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 HOMER2Q9NSB8 354 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 SCINQ9Y6U3 715 aa12.11□□□□□ -0.47
HDAC4-210ENST00000493582 CSDE1O75534 798 aaKnown RBP12.1□□□□□ -0.47
HDAC4-210ENST00000493582 C1QAP02745 245 aa12.1□□□□□ -0.47
HDAC4-210ENST00000493582 IDH3AP50213 366 aa12.1□□□□□ -0.47
HDAC4-210ENST00000493582 GTF2BQ00403 316 aa12.1□□□□□ -0.47
HDAC4-210ENST00000493582 DPYSL3Q14195 570 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms