RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 HESX1Q9UBX0 185 aa19.06■□□□□ 0.64
COL9A3-214ENST00000490398 SH3BP1Q9Y3L3 701 aa19.06■□□□□ 0.64
COL9A3-214ENST00000490398 M0QYV0 167 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 ZBED1O96006 694 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 KRT5P13647 590 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 PLA2G4AP47712 749 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 ADIGQ0VDE8 80 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 MAN2A1Q16706 1144 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 ARHGAP44Q17R89 818 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 VWA3BQ502W6 1294 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 C10orf120Q5SQS8 335 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 PM20D1Q6GTS8 502 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 DENND1BQ6P3S1 775 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 DDX42Q86XP3 938 aaKnown RBP eCLIP19.05■□□□□ 0.64
COL9A3-214ENST00000490398 NELL1Q92832 810 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 CD101Q93033 1021 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 TUBGCP2Q9BSJ2 902 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 CLIC5Q9NZA1 410 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 DACH1Q9UI36 760 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 NFE2L3Q9Y4A8 694 aa19.05■□□□□ 0.64
COL9A3-214ENST00000490398 YJEFN3A6XGL0 299 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 KCNJ18B7U540 433 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 E7ENQ6 273 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 RNF40O75150 1001 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 PNMA6AP0CW24 399 aaPredicted RBP19.04■□□□□ 0.64
COL9A3-214ENST00000490398 LCP1P13796 627 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 YWHAGP61981 247 aaKnown RBP eCLIP19.04■□□□□ 0.64
COL9A3-214ENST00000490398 KCNMA1Q12791 1236 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 EFEMP1Q12805 493 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 GRSF1Q12849 480 aaKnown RBP eCLIP19.04■□□□□ 0.64
COL9A3-214ENST00000490398 KCNJ12Q14500 433 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 EXOC3L4Q17RC7 722 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 LY6G5CQ5SRR4 150 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 MAMSTRQ6ZN01 415 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 TMEM25Q86YD3 366 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 MIB1Q86YT6 1006 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 SPEM1Q8N4L4 309 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 CLEC4CQ8WTT0 213 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 NDST4Q9H3R1 872 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 LRRC4Q9HBW1 653 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 TMEM63CQ9P1W3 806 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 APEX2Q9UBZ4 518 aa19.04■□□□□ 0.64
COL9A3-214ENST00000490398 CFAP54Q96N23 3096 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 GTPBP10A4D1E9 387 aaKnown RBP19.03■□□□□ 0.64
COL9A3-214ENST00000490398 PRR23AA6NEV1 266 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 GOLGA6L22H0YM25 854 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 K7ESF4 209 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 SLC9A3R1O14745 358 aaPredicted RBP19.03■□□□□ 0.64
COL9A3-214ENST00000490398 KLKB1P03952 638 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 HMBSP08397 361 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 SETSIPP0DME0 302 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 PRKCSHP14314 528 aaPredicted RBP19.03■□□□□ 0.64
COL9A3-214ENST00000490398 CXCL12P48061 93 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 SLC8A3P57103 927 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 ZNF528Q3MIS6 628 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 KLHDC10Q6PID8 442 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 HTR3DQ70Z44 454 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 ZNF276Q8N554 614 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 KIAA1958Q8N8K9 716 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 ENOX1Q8TC92 643 aaKnown RBP19.03■□□□□ 0.64
COL9A3-214ENST00000490398 KCTD13Q8WZ19 329 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 TAB2Q9NYJ8 693 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 CYTH4Q9UIA0 394 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 RASAL2Q9UJF2 1139 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 DNMT3LQ9UJW3 386 aa19.03■□□□□ 0.64
COL9A3-214ENST00000490398 K7EQS6 105 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 TRIM24O15164 1050 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 GFRA3O60609 400 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 STC2O76061 302 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 LETM1O95202 739 aaPredicted RBP19.02■□□□□ 0.64
COL9A3-214ENST00000490398 RALAP11233 206 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 DRD1P21728 446 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 PSEN1P49768 467 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 MFAP3P55082 362 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 DAOAP59103 153 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 NR1H3Q13133 447 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 TCP11X2Q5H9J9 407 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 CDKAL1Q5VV42 579 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 FAM114A1Q8IWE2 563 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 NAT16Q8N8M0 369 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 EDEM1Q92611 657 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 TBC1D14Q9P2M4 693 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 DNAJC12Q9UKB3 198 aa19.02■□□□□ 0.64
COL9A3-214ENST00000490398 CHRM1P11229 460 aaPredicted RBP19.01■□□□□ 0.63
COL9A3-214ENST00000490398 ADH5P11766 374 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 USP8P40818 1118 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 GPD2P43304 727 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 CCR3P51677 355 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 AMPD2Q01433 879 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 CT47A1Q5JQC4 288 aaPredicted RBP19.01■□□□□ 0.63
COL9A3-214ENST00000490398 CCDC183Q5T5S1 534 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 BSPRYQ5W0U4 402 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 Q6ZNB5 142 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 PHTF2Q8N3S3 785 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 SYNPOQ8N3V7 929 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 ZBTB44Q8NCP5 570 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 ZNF606Q8WXB4 792 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 SHC3Q92529 594 aa19.01■□□□□ 0.63
COL9A3-214ENST00000490398 NKD2Q969F2 451 aaPredicted RBP19.01■□□□□ 0.63
COL9A3-214ENST00000490398 IER2Q9BTL4 223 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms