RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 VPS36Q86VN1 386 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 DDX42Q86XP3 938 aaKnown RBP eCLIP11.4□□□□□ -0.58
VPS13D-210ENST00000489961 ZDHHC17Q8IUH5 632 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 CNGA4Q8IV77 575 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 MFSD6LQ8IWD5 586 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 YAF2Q8IY57 180 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 SLC44A3Q8N4M1 653 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 ST13P5Q8NFI4 369 aaPredicted RBP11.4□□□□□ -0.58
VPS13D-210ENST00000489961 OR8K1Q8NGG5 319 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 BPIFB1Q8TDL5 484 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 CLEC4CQ8WTT0 213 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 RNF139Q8WU17 664 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 CPA5Q8WXQ8 436 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 USP13Q92995 863 aaPredicted RBP11.4□□□□□ -0.58
VPS13D-210ENST00000489961 FAM149B1Q96BN6 582 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 SMG9Q9H0W8 520 aaKnown RBP11.4□□□□□ -0.58
VPS13D-210ENST00000489961 ZNHIT6Q9NWK9 470 aaKnown RBP11.4□□□□□ -0.58
VPS13D-210ENST00000489961 THG1LQ9NWX6 298 aaKnown RBP11.4□□□□□ -0.58
VPS13D-210ENST00000489961 TJP2Q9UDY2 1190 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 DNMT3LQ9UJW3 386 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 STRIP2Q9ULQ0 834 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 CPQQ9Y646 472 aa11.4□□□□□ -0.58
VPS13D-210ENST00000489961 AKR1B15C9JRZ8 316 aaPredicted RBP11.39□□□□□ -0.59
VPS13D-210ENST00000489961 CAPN9O14815 690 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 MFAP3LO75121 409 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 GLI1P08151 1106 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 UNGP13051 313 aaPredicted RBP11.39□□□□□ -0.59
VPS13D-210ENST00000489961 TCF3P15923 654 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 PSMC3P17980 439 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 HNRNPH3P31942 346 aaKnown RBP11.39□□□□□ -0.59
VPS13D-210ENST00000489961 GABRB2P47870 512 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 CENPCQ03188 943 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 TBX2Q13207 712 aaPredicted RBP11.39□□□□□ -0.59
VPS13D-210ENST00000489961 VITQ6UXI7 678 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 HFE2Q6ZVN8 426 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 FAM183BPQ6ZVS7 135 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 BEND5Q7L4P6 421 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 ZNF571Q7Z3V5 609 aaPredicted RBP11.39□□□□□ -0.59
VPS13D-210ENST00000489961 DRC7Q8IY82 874 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 TTC16Q8NEE8 873 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 SLC30A5Q8TAD4 765 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 SH3RF2Q8TEC5 729 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 EDEM1Q92611 657 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 PCDHB18PQ96TA0 734 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 DNAJC7Q99615 494 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 SYT11Q9BT88 431 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 RPP25Q9BUL9 199 aaKnown RBP11.39□□□□□ -0.59
VPS13D-210ENST00000489961 TRMT61BQ9BVS5 477 aaKnown RBP11.39□□□□□ -0.59
VPS13D-210ENST00000489961 PLA2G2FQ9BZM2 168 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 ASNSD1Q9NWL6 643 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 SMPD4Q9NXE4 827 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 MUTYHQ9UIF7 546 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 RASAL2Q9UJF2 1139 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 NUDT5Q9UKK9 219 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 CCL26Q9Y258 94 aa11.39□□□□□ -0.59
VPS13D-210ENST00000489961 C5orf42Q9H799 3197 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 FAM170AA1A519 330 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 LEFTY2O00292 366 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 ZNF263O14978 683 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 HSF2BPO75031 334 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 ADCY5O95622 1261 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 TBX18O95935 607 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 CALB1P05937 261 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 SRFP11831 508 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 NCAM1P13591 858 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 MMP8P22894 467 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 CDC25BP30305 580 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 SCNN1AP37088 669 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 ADKP55263 362 aaKnown RBP11.38□□□□□ -0.59
VPS13D-210ENST00000489961 YWHAZP63104 245 aaKnown RBP11.38□□□□□ -0.59
VPS13D-210ENST00000489961 COG7P83436 770 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 SLC6A3Q01959 620 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 EFEMP1Q12805 493 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 USP4Q13107 963 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 GRM2Q14416 872 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 ARID5BQ14865 1188 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 MTF1Q14872 753 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 ZNF77Q15935 545 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 ARHGAP29Q52LW3 1261 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 HGSNATQ68CP4 663 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 ACAD10Q6JQN1 1059 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 CC2D1AQ6P1N0 951 aaPredicted RBP11.38□□□□□ -0.59
VPS13D-210ENST00000489961 OLFML1Q6UWY5 402 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 MMS22LQ6ZRQ5 1243 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 SLC26A9Q7LBE3 791 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 XYLT1Q86Y38 959 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 PHF13Q86YI8 300 aaPredicted RBP11.38□□□□□ -0.59
VPS13D-210ENST00000489961 MIB1Q86YT6 1006 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 UBALD2Q8IYN6 164 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 RSPRY1Q96DX4 576 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 C11orf70Q9BRQ4 267 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS13D-210ENST00000489961 KLF16Q9BXK1 252 aaPredicted RBP11.38□□□□□ -0.59
VPS13D-210ENST00000489961 POPDC2Q9HBU9 364 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 ABHD10Q9NUJ1 306 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 ADAM22Q9P0K1 906 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 MARCH2Q9P0N8 246 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 WDR35Q9P2L0 1181 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 DUSP12Q9UNI6 340 aa11.38□□□□□ -0.59
VPS13D-210ENST00000489961 SH3BP1Q9Y3L3 701 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms