RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 SNRNP25Q9BV90 132 aaKnown RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 CXCL16Q9H2A7 254 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 CDHR5Q9HBB8 845 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 HAUS2Q9NVX0 235 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 ARL2BPQ9Y2Y0 163 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TEX264Q9Y6I9 313 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TSC2P49815 1807 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 SMIM28A0A1B0GU29 152 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 KPNA7A9QM74 516 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 ZNF189O75820 626 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 ZWINTO95229 277 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TAC1P20366 129 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 HDAC4P56524 1084 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 MMRN1Q13201 1228 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 SPARCL1Q14515 664 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 GALNTL6Q49A17 601 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 MSS51Q4VC12 460 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 MCUQ8NE86 351 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 CD99L2Q8TCZ2 262 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 APBB2Q92870 758 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 LRRC39Q96DD0 335 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TGS1Q96RS0 853 aaKnown RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 OSMRQ99650 979 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 NXF3Q9H4D5 531 aaKnown RBP12.72□□□□□ -0.37
PTPRF-212ENST00000477970 TBK1Q9UHD2 729 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 STARD13Q9Y3M8 1113 aa12.72□□□□□ -0.37
PTPRF-212ENST00000477970 DYNC1LI2O43237 492 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-212ENST00000477970 TAF6P49848 677 aa12.71□□□□□ -0.37
PTPRF-212ENST00000477970 WDR4P57081 412 aaKnown RBP12.71□□□□□ -0.37
PTPRF-212ENST00000477970 LRRC14Q15048 493 aa12.71□□□□□ -0.37
PTPRF-212ENST00000477970 BNIPLQ7Z465 357 aa12.71□□□□□ -0.37
PTPRF-212ENST00000477970 SPATA21Q7Z572 469 aa12.71□□□□□ -0.37
PTPRF-212ENST00000477970 CDKL3Q8IVW4 592 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-212ENST00000477970 FBXO36Q8NEA4 188 aa12.71□□□□□ -0.37
PTPRF-212ENST00000477970 C18orf25Q96B23 403 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-212ENST00000477970 A8MXQ7 604 aa12.71□□□□□ -0.38
PTPRF-212ENST00000477970 PDK4Q16654 411 aa12.71□□□□□ -0.38
PTPRF-212ENST00000477970 ANKRD42Q8N9B4 389 aa12.71□□□□□ -0.38
PTPRF-212ENST00000477970 PCDH19Q8TAB3 1148 aa12.71□□□□□ -0.38
PTPRF-212ENST00000477970 DCAKDQ8WVC6 231 aa12.71□□□□□ -0.38
PTPRF-212ENST00000477970 TRIM6Q9C030 488 aaPredicted RBP12.71□□□□□ -0.38
PTPRF-212ENST00000477970 FAM49AQ9H0Q0 323 aaPredicted RBP12.71□□□□□ -0.38
PTPRF-212ENST00000477970 GJD2Q9UKL4 321 aa12.71□□□□□ -0.38
PTPRF-212ENST00000477970 SF3B1O75533 1304 aaKnown RBP eCLIP12.7□□□□□ -0.38
PTPRF-212ENST00000477970 TCRBV7S3A2A0A539 114 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 XPO1O14980 1071 aaKnown RBP12.7□□□□□ -0.38
PTPRF-212ENST00000477970 TM9SF1O15321 606 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 OR6B3Q8NGW1 331 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 TNIP3Q96KP6 325 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 FGFR1OP2Q9NVK5 253 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 CPA4Q9UI42 421 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 GCATO75600 419 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 GNAT1P11488 350 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 L1CAMP32004 1257 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 GNL1P36915 607 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-212ENST00000477970 PSMC4P43686 418 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 RGS7P49802 495 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 FCGRTP55899 365 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 HIC1Q14526 733 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 EFHC1Q5JVL4 640 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 NUGGCQ68CJ6 796 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 NPNTQ6UXI9 565 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 C3orf62Q6ZUJ4 267 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 MGARPQ8TDB4 240 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 KCTD13Q8WZ19 329 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 CYTH2Q99418 400 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 HNRNPABQ99729 332 aaKnown RBP12.7□□□□□ -0.38
PTPRF-212ENST00000477970 FRMPD3Q5JV73 1810 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 CFAP73A6NFT4 308 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 POC1B-GALNT4F8VUJ3 575 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 TPSB2P20231 275 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 HOXD10P28358 340 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 BCAR1P56945 870 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 CAP1Q01518 475 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 TPSAB1Q15661 275 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 SPRED3Q2MJR0 410 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 RAB6CQ53S08 254 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 SPDYAQ5MJ70 313 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 APPL2Q8NEU8 664 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 FBF1Q8TES7 1133 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 PAFAH2Q99487 392 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 RAB6CQ9H0N0 254 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 NRDE2Q9H7Z3 1164 aa12.7□□□□□ -0.38
PTPRF-212ENST00000477970 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.7□□□□□ -0.382e-15■■□□□ 13.9
PTPRF-212ENST00000477970 HACD1B0YJ81 288 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 TRDMT1O14717 391 aaKnown RBP12.69□□□□□ -0.38
PTPRF-212ENST00000477970 KPNA6O60684 536 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 DAB1O75553 588 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 FGFR1P11362 822 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 KRT15P19012 456 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 MAGEA3P43357 314 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 GAD2Q05329 585 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 CGB2Q6NT52 195 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 ANKMY2Q8IV38 441 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 PALM2Q8IXS6 379 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 NT5C3BQ969T7 300 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 ABHD8Q96I13 439 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 SNX25Q9H3E2 840 aa12.69□□□□□ -0.38
PTPRF-212ENST00000477970 DPEP3Q9H4B8 488 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms