RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 SH3BP5O60239 455 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 TADA2AO75478 443 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 HOXD10P28358 340 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 MTFR1Q15390 333 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 C15orf59Q2T9L4 293 aaPredicted RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 TSHZ1Q6ZSZ6 1077 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 PRUNE1Q86TP1 453 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 MTDHQ86UE4 582 aaKnown RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 HTR3CQ8WXA8 447 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 GMLQ99445 158 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 R3HDM2Q9Y2K5 976 aaKnown RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 CNTNAP1P78357 1384 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 CHADO15335 359 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 TSHRP16473 764 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 BGNP21810 368 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 RBL1P28749 1068 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 MYLK4Q86YV6 388 aaPredicted RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 ST13P4Q8IZP2 240 aaPredicted RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 CALML6Q8TD86 181 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 SLC2A14Q8TDB8 520 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 CCDC124Q96CT7 223 aaKnown RBP15.13■□□□□ 0.01
HDAC6-220ENST00000477528 LRRC39Q96DD0 335 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 THTPAQ9BU02 230 aa15.13■□□□□ 0.01
HDAC6-220ENST00000477528 NWD2Q9ULI1 1742 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 GJB1P08034 283 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 ADIGQ0VDE8 80 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 MAPRE2Q15555 327 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 MFSD5Q6N075 450 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 FAM183BPQ6ZVS7 135 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 PWWP2AQ96N64 755 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 CAMKK2Q96RR4 588 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.12■□□□□ 0.01
HDAC6-220ENST00000477528 CST3P01034 146 aaPredicted RBP15.12■□□□□ 0.01
HDAC6-220ENST00000477528 APOA4P06727 396 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 BMPR2Q13873 1038 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 MFSD10Q14728 455 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 DTX3LQ8TDB6 740 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 PABPC5Q96DU9 382 aaKnown RBP15.12■□□□□ 0.01
HDAC6-220ENST00000477528 TMEM109Q9BVC6 243 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 SLC39A10Q9ULF5 831 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 UMODL1Q5DID0 1318 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 E2F8A0AVK6 867 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 TRDMT1O14717 391 aaKnown RBP15.12■□□□□ 0.01
HDAC6-220ENST00000477528 RECQL4O94761 1208 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 SHCBP1Q8NEM2 672 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 ZNF75CPQ92670 426 aaPredicted RBP15.12■□□□□ 0.01
HDAC6-220ENST00000477528 SDCCAG3Q96C92 435 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 ELMO2Q96JJ3 720 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 TMEM120AQ9BXJ8 343 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 BATF3Q9NR55 127 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 EFR3BQ9Y2G0 817 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 HACD1B0YJ81 288 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 TIMM44O43615 452 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 RPLP2P05387 115 aaKnown RBP15.12■□□□□ 0.01
HDAC6-220ENST00000477528 CASP2P42575 452 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 PEX5P50542 639 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 YWHAHQ04917 246 aaPredicted RBP15.12■□□□□ 0.01
HDAC6-220ENST00000477528 KCNT2Q6UVM3 1135 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 KIRREL3Q8IZU9 778 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 DDX27Q96GQ7 796 aaKnown RBP15.12■□□□□ 0.01
HDAC6-220ENST00000477528 UBXN6Q9BZV1 441 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 DDX43Q9NXZ2 648 aaKnown RBP15.12■□□□□ 0.01
HDAC6-220ENST00000477528 CPA4Q9UI42 421 aa15.12■□□□□ 0.01
HDAC6-220ENST00000477528 ALOX15BO15296 676 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 UNGP13051 313 aaPredicted RBP15.11■□□□□ 0.01
HDAC6-220ENST00000477528 ALADP13716 330 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 AMPD1P23109 780 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 SERPINB8P50452 374 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 MGAT5Q09328 741 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 EFTUD2Q15029 972 aaKnown RBP eCLIP15.11■□□□□ 0.015e-7■■■■■ 27.2
HDAC6-220ENST00000477528 PTPN20Q4JDL3 420 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 DEFB106AQ8N104 65 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 BORCS6Q96GS4 357 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 FBXL18Q96ME1 805 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 RNF157Q96PX1 679 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 SYT15Q9BQS2 421 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 OSBPL1AQ9BXW6 950 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 TRIM15Q9C019 465 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 TRIM4Q9C037 500 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 SUN2Q9UH99 717 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 AAR2Q9Y312 384 aaKnown RBP15.11■□□□□ 0.01
HDAC6-220ENST00000477528 TOGARAM1Q9Y4F4 1720 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 CHD4Q14839 1912 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 SNX2O60749 519 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 LAMB3Q13751 1172 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 CYP1B1Q16678 543 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 RPAINQ86UA6 219 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 PRDM16Q9HAZ2 1276 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 RRN3Q9NYV6 651 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 USP2O75604 605 aaPredicted RBP15.11■□□□□ 0.01
HDAC6-220ENST00000477528 FAAP100Q0VG06 881 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 PCBP1Q15365 356 aaKnown RBP eCLIP15.11■□□□□ 0.01
HDAC6-220ENST00000477528 TLK2Q86UE8 772 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 PDCD6IPQ8WUM4 868 aaKnown RBP15.11■□□□□ 0.01
HDAC6-220ENST00000477528 CRYGNQ8WXF5 182 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 KCNK16Q96T55 309 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 PCDHGC3Q9UN70 934 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 ZNF541Q9H0D2 1346 aa15.11■□□□□ 0.01
HDAC6-220ENST00000477528 NEMP1O14524 444 aa15.1■□□□□ 0.01
HDAC6-220ENST00000477528 ATP6V1G2O95670 118 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms