RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 HSPA12BQ96MM6 686 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 PNMA5Q96PV4 448 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 MRPL4Q9BYD3 311 aaKnown RBP5.69□□□□□ -1.5
PTPN4-209ENST00000469511 TRIM9Q9C026 710 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 CD248Q9HCU0 757 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 TUFT1Q9NNX1 390 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 CALCOCO1Q9P1Z2 691 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 DKK4Q9UBT3 224 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 CYP8B1Q9UNU6 501 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 PIEZO2Q9H5I5 2752 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 PHLPP2Q6ZVD8 1323 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 A0A1W2PQF6 199 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 PP2D1A8MPX8 630 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 CBX4O00257 560 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 PLK4O00444 970 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 PIRO00625 290 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 KCNK3O14649 394 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 CPLX1O14810 134 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 FAM189A1O60320 539 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 NEMFO60524 1076 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 HIP1RO75146 1068 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 PRPF40AO75400 957 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 KAT7O95251 611 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 FGF19O95750 216 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 NFICP08651 508 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 MAPTP10636 758 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 ACAT1P24752 427 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 RPA1P27694 616 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 CDC25AP30304 524 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 MCM7P33993 719 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 ABCG1P45844 678 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 MRPS21P82921 87 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 ATP2C1P98194 919 aaPredicted RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 AMPD2Q01433 879 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 RAD51AP2Q09MP3 1159 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 VEPH1Q14D04 833 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 PPP2R5AQ15172 486 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 DHCR24Q15392 516 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF174Q15697 407 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 C8orf34Q49A92 452 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 C9orf57Q5W0N0 161 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 JADE1Q6IE81 842 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 FILIP1Q7Z7B0 1213 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 GLRX5Q86SX6 157 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 OSTM1Q86WC4 334 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 ADGRG2Q8IZP9 1017 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 NAT16Q8N8M0 369 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 SETD7Q8WTS6 366 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 MRPS31Q92665 395 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 ATP2A3Q93084 1043 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 YTHDC1Q96MU7 727 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 GCNAQ96QF7 691 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 PYM1Q9BRP8 204 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 NIF3L1Q9GZT8 377 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 RNF38Q9H0F5 515 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 IKZF4Q9H2S9 585 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 KIF9Q9HAQ2 790 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 KMT5AQ9NQR1 393 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 ATXN7L1Q9ULK2 861 aaPredicted RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 UBQLN1Q9UMX0 589 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 APOBEC2Q9Y235 224 aaKnown RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 RAD54BQ9Y620 910 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 USP9XQ93008 2570 aaPredicted RBP5.68□□□□□ -1.5
PTPN4-209ENST00000469511 PLXNA2O75051 1894 aa5.68□□□□□ -1.5
PTPN4-209ENST00000469511 TDRD6O60522 2096 aaKnown RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 A0A0A0MRY4 1105 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 NPHP3-ACAD11A0A0J9YXS1 232 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 A0A1W2PQD8 194 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 ANO9A1A5B4 782 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 TISP43B9A030 160 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 WASH3PC4AMC7 463 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 LEFTY2O00292 366 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 CYB561D2O14569 222 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 ARHGAP6O43182 974 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 AP5Z1O43299 807 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 BNIP3LO60238 219 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 ATP2C2O75185 946 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 CILPO75339 1184 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 TOM1L1O75674 476 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 ALDH1A2O94788 518 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 NOL4O94818 638 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 CYP11A1P05108 521 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 CKMP06732 381 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 SYPP08247 313 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 USP17L7P0C7H9 530 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 ODC1P11926 461 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 HDCP19113 662 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 CYP3A5P20815 502 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 DDX6P26196 483 aaKnown RBP eCLIP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 KRT2P35908 639 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 CCT6AP40227 531 aaKnown RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 CFHR1Q03591 330 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 MCL1Q07820 350 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 SRSF1Q07955 248 aaKnown RBP eCLIP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 SLC14A1Q13336 389 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 HNRNPDQ14103 355 aaKnown RBP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 NOLC1Q14978 699 aaKnown RBP eCLIP5.67□□□□□ -1.5
PTPN4-209ENST00000469511 KIF26BQ2KJY2 2108 aa5.67□□□□□ -1.5
PTPN4-209ENST00000469511 SPATA1Q5VX52 437 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms