RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PHF13Q86YI8 300 aaPredicted RBP12.93□□□□□ -0.34
HDAC4-208ENST00000463007 KIAA0319LQ8IZA0 1049 aa12.93□□□□□ -0.34
HDAC4-208ENST00000463007 UNC5BQ8IZJ1 945 aa12.93□□□□□ -0.34
HDAC4-208ENST00000463007 MTBPQ96DY7 904 aa12.93□□□□□ -0.34
HDAC4-208ENST00000463007 SPATC1LQ9H0A9 340 aa12.93□□□□□ -0.34
HDAC4-208ENST00000463007 ACSS3Q9H6R3 686 aa12.93□□□□□ -0.34
HDAC4-208ENST00000463007 PCDH9Q9HC56 1237 aa12.93□□□□□ -0.34
HDAC4-208ENST00000463007 CYLDQ9NQC7 956 aa12.93□□□□□ -0.34
HDAC4-208ENST00000463007 NDE1Q9NXR1 346 aa12.93□□□□□ -0.34
HDAC4-208ENST00000463007 DNAJC25-GNG10A0A024R161 153 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 ARIH2O95376 493 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 LMNAP02545 664 aaKnown RBP12.92□□□□□ -0.34
HDAC4-208ENST00000463007 TGFB3P10600 412 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 PROZP22891 400 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 SMYD5Q6GMV2 418 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 ADGRD1Q6QNK2 874 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 FAM136AQ96C01 138 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 NMD3Q96D46 503 aaKnown RBP12.92□□□□□ -0.34
HDAC4-208ENST00000463007 PANX3Q96QZ0 392 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 SAR1AQ9NR31 198 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 WDR35Q9P2L0 1181 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 SHOC2Q9UQ13 582 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 IQANK1A0A1B0GTG1 560 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 PGM3O95394 542 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 C6orf222P0C671 652 aaPredicted RBP12.92□□□□□ -0.34
HDAC4-208ENST00000463007 MMP8P22894 467 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 TRPC3Q13507 836 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 LAMB3Q13751 1172 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 KLHL38Q2WGJ6 581 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 PPP6R3Q5H9R7 873 aaPredicted RBP12.92□□□□□ -0.34
HDAC4-208ENST00000463007 METTL7BQ6UX53 244 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 RAPH1Q70E73 1250 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 BRSK2Q8IWQ3 736 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.92□□□□□ -0.34
HDAC4-208ENST00000463007 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.92□□□□□ -0.34
HDAC4-208ENST00000463007 SLC7A3Q8WY07 619 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 C20orf27Q9GZN8 174 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 EBF3Q9H4W6 596 aa12.92□□□□□ -0.34
HDAC4-208ENST00000463007 LDHAP00338 332 aaKnown RBP12.91□□□□□ -0.34
HDAC4-208ENST00000463007 ANPEPP15144 967 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 NCF2P19878 526 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-208ENST00000463007 ROR2Q01974 943 aaKnown RBP12.91□□□□□ -0.34
HDAC4-208ENST00000463007 DENND5BQ6ZUT9 1274 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 RASSF3Q86WH2 238 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 NDUFAF2Q8N183 169 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 ZNF276Q8N554 614 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 VCPIP1Q96JH7 1222 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 PGLYRP2Q96PD5 576 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 OCEL1Q9H607 264 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 PTPRHQ9HD43 1115 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 CISHQ9NSE2 258 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 POLIQ9UNA4 740 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 MTO1Q9Y2Z2 717 aaKnown RBP12.91□□□□□ -0.34
HDAC4-208ENST00000463007 AK5Q9Y6K8 562 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 MCF2LO15068 1137 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 KCNN4O15554 427 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 LYNP07948 512 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 KCNA4P22459 653 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 CDH6P55285 790 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 GRAMD1BQ3KR37 738 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 VWA5B1Q5TIE3 1220 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 DENND1BQ6P3S1 775 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 ULK2Q8IYT8 1036 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 TMEM35BQ8NCS4 154 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 SLC7A8Q9UHI5 535 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 A6NJR5 290 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 E7ENQ6 273 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 SPECC1L-ADORA2AF8WAN1 911 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 ASS1P00966 412 aaKnown RBP12.91□□□□□ -0.34
HDAC4-208ENST00000463007 PYGLP06737 847 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 RARBP10826 455 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 CCNFP41002 786 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 MCL1Q07820 350 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 USP4Q13107 963 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 CES4AQ5XG92 561 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 CEP128Q6ZU80 1094 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 TDRPQ86YL5 185 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 HACE1Q8IYU2 909 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 UBA3Q8TBC4 463 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 E2F7Q96AV8 911 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 MOCOSQ96EN8 888 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 GPR20Q99678 358 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 ASCC2Q9H1I8 757 aaPredicted RBP12.91□□□□□ -0.34
HDAC4-208ENST00000463007 VPS11Q9H270 941 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 CLIC5Q9NZA1 410 aa12.91□□□□□ -0.34
HDAC4-208ENST00000463007 STX18Q9P2W9 335 aaKnown RBP12.91□□□□□ -0.34
HDAC4-208ENST00000463007 MAGEA13PA6NCF6 341 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 LRCH4O75427 683 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 NPTXRO95502 500 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 TCF7P36402 384 aaPredicted RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 STAT5BP51692 787 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 ASPHQ12797 758 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 DPYSL3Q14195 570 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 C15orf59Q2T9L4 293 aaPredicted RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 TRMT10BQ6PF06 316 aaKnown RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 TRIM72Q6ZMU5 477 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 GALNT15Q8N3T1 639 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 SKA1Q96BD8 255 aa12.9□□□□□ -0.34
HDAC4-208ENST00000463007 DNAJC1Q96KC8 554 aaKnown RBP12.9□□□□□ -0.34
HDAC4-208ENST00000463007 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.9□□□□□ -0.349e-8■■■■□ 23.7
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms