RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 TULP2O00295 520 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 TRDMT1O14717 391 aaKnown RBP18.23■□□□□ 0.51
USP39-208ENST00000455732 TDGF1P13385 188 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 GJA4P35212 333 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 TKTL1P51854 596 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 APBA1Q02410 837 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 CSTF1Q05048 431 aaKnown RBP18.23■□□□□ 0.51
USP39-208ENST00000455732 TMEM196Q5HYL7 178 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 CAVIN1Q6NZI2 390 aaKnown RBP18.23■□□□□ 0.51
USP39-208ENST00000455732 SCD5Q86SK9 330 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 TADA2BQ86TJ2 420 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 SCML4Q8N228 414 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 TTC16Q8NEE8 873 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 SLC35F5Q8WV83 523 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 CDK5RAP1Q96SZ6 601 aaKnown RBP18.23■□□□□ 0.51
USP39-208ENST00000455732 LINC00597Q9H2U6 94 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 SEMA4AQ9H3S1 761 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 CFAP97Q9P2B7 532 aa18.23■□□□□ 0.51
USP39-208ENST00000455732 E2F8A0AVK6 867 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 BECN2A8MW95 431 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 M0QYV0 167 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 SLC9A3R1O14745 358 aaPredicted RBP18.22■□□□□ 0.51
USP39-208ENST00000455732 NFATC1O95644 943 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 ZBED1O96006 694 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 RARGP13631 454 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 PTMSP20962 102 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 AMPD2Q01433 879 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 KRT31Q15323 416 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 ZC3H14Q6PJT7 736 aaKnown RBP18.22■□□□□ 0.51
USP39-208ENST00000455732 TSSK4Q6SA08 328 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 Q6ZS52 159 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 SYNPOQ8N3V7 929 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 SPEM1Q8N4L4 309 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 ZBTB44Q8NCP5 570 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 UBA3Q8TBC4 463 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 NACA2Q9H009 215 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 LRRC4Q9HBW1 653 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 FANCLQ9NW38 375 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 TAB2Q9NYJ8 693 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 NAGPAQ9UK23 515 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 GPR179Q6PRD1 2367 aa18.22■□□□□ 0.51
USP39-208ENST00000455732 RALAP11233 206 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 ZNF18P17022 549 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 ATP5C1P36542 298 aaKnown RBP18.21■□□□□ 0.51
USP39-208ENST00000455732 CCR3P51677 355 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 ADIGQ0VDE8 80 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 KCNMA1Q12791 1236 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 NCAPHQ15003 741 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 ARHGAP44Q17R89 818 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 FSTL4Q6MZW2 842 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 BHLHA9Q7RTU4 235 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 SECISBP2LQ93073 1101 aaKnown RBP18.21■□□□□ 0.51
USP39-208ENST00000455732 OTUB2Q96DC9 234 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 HSFY1Q96LI6 401 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 BPIFA3Q9BQP9 254 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 ULBP1Q9BZM6 244 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 NAT10Q9H0A0 1025 aaKnown RBP18.21■□□□□ 0.51
USP39-208ENST00000455732 FBRSL1Q9HCM7 1045 aaKnown RBP18.21■□□□□ 0.51
USP39-208ENST00000455732 CNGB3Q9NQW8 809 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 TBC1D14Q9P2M4 693 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 DNMT3LQ9UJW3 386 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 DNAJC12Q9UKB3 198 aa18.21■□□□□ 0.51
USP39-208ENST00000455732 AJAP1Q9UKB5 411 aaPredicted RBP18.21■□□□□ 0.51
USP39-208ENST00000455732 SPTBN4Q9H254 2564 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 MYO18AQ92614 2054 aaKnown RBP18.2■□□□□ 0.5
USP39-208ENST00000455732 PES1O00541 588 aaKnown RBP18.2■□□□□ 0.5
USP39-208ENST00000455732 MED7O43513 233 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 TBX18O95935 607 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 CALCAP01258 141 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 TPM2P07951 284 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 GNA15P30679 374 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 RPL34P49207 117 aaKnown RBP18.2■□□□□ 0.5
USP39-208ENST00000455732 GALK1P51570 392 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 YWHAGP61981 247 aaKnown RBP eCLIP18.2■□□□□ 0.5
USP39-208ENST00000455732 SATB1Q01826 763 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 KLHDC7AQ5VTJ3 777 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 NAIF1Q69YI7 327 aaPredicted RBP18.2■□□□□ 0.5
USP39-208ENST00000455732 PMF1Q6P1K2 205 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 SIX6OS1Q8N1H7 587 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 ZNF606Q8WXB4 792 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 KLF16Q9BXK1 252 aaPredicted RBP18.2■□□□□ 0.5
USP39-208ENST00000455732 FAM126AQ9BYI3 521 aaPredicted RBP18.2■□□□□ 0.5
USP39-208ENST00000455732 PLCB1Q9NQ66 1216 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 ZSCAN32Q9NX65 697 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 LIMA1Q9UHB6 759 aaKnown RBP18.2■□□□□ 0.5
USP39-208ENST00000455732 PCDHGA2Q9Y5H1 932 aa18.2■□□□□ 0.5
USP39-208ENST00000455732 EML5Q05BV3 1969 aa18.19■□□□□ 0.5
USP39-208ENST00000455732 GREM1O60565 184 aa18.19■□□□□ 0.5
USP39-208ENST00000455732 LILRB5O75023 590 aa18.19■□□□□ 0.5
USP39-208ENST00000455732 LETM1O95202 739 aaPredicted RBP18.19■□□□□ 0.5
USP39-208ENST00000455732 PAPSS2O95340 614 aaPredicted RBP18.19■□□□□ 0.5
USP39-208ENST00000455732 LMNAP02545 664 aaKnown RBP18.19■□□□□ 0.5
USP39-208ENST00000455732 GPD2P43304 727 aa18.19■□□□□ 0.5
USP39-208ENST00000455732 CXCL12P48061 93 aa18.19■□□□□ 0.5
USP39-208ENST00000455732 GOLGA8FQ08AF8 430 aa18.19■□□□□ 0.5
USP39-208ENST00000455732 GOLGA8DPQ0D2H9 430 aa18.19■□□□□ 0.5
USP39-208ENST00000455732 GRSF1Q12849 480 aaKnown RBP eCLIP18.19■□□□□ 0.5
USP39-208ENST00000455732 NR1H3Q13133 447 aa18.19■□□□□ 0.5
USP39-208ENST00000455732 GAB4Q2WGN9 574 aa18.19■□□□□ 0.5
USP39-208ENST00000455732 ANO6Q4KMQ2 910 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms