RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 SHISA4Q96DD7 197 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 VCPIP1Q96JH7 1222 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 TMEM175Q9BSA9 504 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 AP3B1O00203 1094 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 RNASEH1O60930 286 aaKnown RBP13.4□□□□□ -0.26
PTCH1-207ENST00000429896 PPFIA2O75334 1257 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 EPHB4P54760 987 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 P3H1Q32P28 736 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 SARS2Q9NP81 518 aaKnown RBP13.4□□□□□ -0.26
PTCH1-207ENST00000429896 SNX24Q9Y343 169 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 E5RJQ4 531 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 CDC25CP30307 473 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 ARHGEF7Q14155 803 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 CDCA2Q69YH5 1023 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-207ENST00000429896 SPATA20Q8TB22 786 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 BADQ92934 168 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 OSBPL8Q9BZF1 889 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 SAYSD1Q9NPB0 183 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 DNMT3LQ9UJW3 386 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 TLK1Q9UKI8 766 aa13.4□□□□□ -0.26
PTCH1-207ENST00000429896 KITP10721 976 aa13.4□□□□□ -0.27
PTCH1-207ENST00000429896 FAM35AQ86V20 835 aa13.4□□□□□ -0.27
PTCH1-207ENST00000429896 DDX42Q86XP3 938 aaKnown RBP eCLIP13.4□□□□□ -0.27
PTCH1-207ENST00000429896 ATL2Q8NHH9 583 aa13.4□□□□□ -0.27
PTCH1-207ENST00000429896 BCAS4Q8TDM0 211 aa13.4□□□□□ -0.27
PTCH1-207ENST00000429896 IL23AQ9NPF7 189 aa13.4□□□□□ -0.27
PTCH1-207ENST00000429896 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.4□□□□□ -0.27
PTCH1-207ENST00000429896 USP18Q9UMW8 372 aa13.4□□□□□ -0.27
PTCH1-207ENST00000429896 GNEQ9Y223 722 aaKnown RBP13.4□□□□□ -0.27
PTCH1-207ENST00000429896 CST8O60676 142 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 BMP6P22004 513 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 WEE1P30291 646 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 DHX9Q08211 1270 aaKnown RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 PDCLQ13371 301 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 ZSCAN26Q16670 478 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 DDR2Q16832 855 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 EPM2AIP1Q7L775 607 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 TAS2R42Q7RTR8 314 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 TPCN2Q8NHX9 752 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 KAT5Q92993 513 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 HSFY1Q96LI6 401 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 GPATCH2LQ9NWQ4 482 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 F8VP50 259 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 SYNCRIPO60506 623 aaKnown RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 TSPAN3O60637 253 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 HADHAP40939 763 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 ARSEP51690 589 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 PLA2G4CQ9UP65 541 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 SQORQ9Y6N5 450 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 PAPOLAP51003 745 aaKnown RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 KPNA2P52292 529 aaKnown RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 MIIPQ5JXC2 388 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 ACBD5Q5T8D3 534 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 DENND1BQ6P3S1 775 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 TRIM10Q9UDY6 481 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 EEF1B2P24534 225 aaKnown RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 STX1BP61266 288 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 IFT88Q13099 833 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 PPHLN1Q8NEY8 458 aaKnown RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 MAML1Q92585 1016 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 ARHGEF26Q96DR7 871 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 CIPCQ9C0C6 399 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 TBC1D13Q9NVG8 400 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 MARCH2Q9P0N8 246 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 AFF4Q9UHB7 1163 aaKnown RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 TYMPP19971 482 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 MARSP56192 900 aaKnown RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 POU5F1Q01860 360 aaKnown RBP13.39□□□□□ -0.27
PTCH1-207ENST00000429896 TWF1Q12792 350 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 PHLDB3Q6NSJ2 640 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 TRIM67Q6ZTA4 783 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 SNF8Q96H20 258 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 FMO2Q99518 471 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 SYNDIG1Q9H7V2 258 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 GJD2Q9UKL4 321 aa13.39□□□□□ -0.27
PTCH1-207ENST00000429896 PROSCO94903 275 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 HDCP19113 662 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 C1orf127Q8N9H9 656 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 SPATA18Q8TC71 538 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 SIK3Q9Y2K2 1263 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 FAM187AA6NFU0 413 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 ESRRBO95718 433 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 PIGRP01833 764 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 C4BPAP04003 597 aaKnown RBP13.38□□□□□ -0.27
PTCH1-207ENST00000429896 RARGP13631 454 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 SDHAF4Q5VUM1 108 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 DDX47Q9H0S4 455 aaKnown RBP13.38□□□□□ -0.27
PTCH1-207ENST00000429896 MFSD1Q9H3U5 465 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 MINDY3Q9H8M7 445 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 CCDC195A0A1B0GUA6 201 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 PRAMEP78395 509 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 NUGGCQ68CJ6 796 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 TIGD7Q6NT04 549 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-207ENST00000429896 FAM43BQ6ZT52 329 aaPredicted RBP13.38□□□□□ -0.27
PTCH1-207ENST00000429896 TFB1MQ8WVM0 346 aaKnown RBP13.38□□□□□ -0.27
PTCH1-207ENST00000429896 VPS39Q96JC1 886 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 DUSP16Q9BY84 665 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 DUSP4Q13115 394 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 SLC10A6Q3KNW5 377 aa13.38□□□□□ -0.27
PTCH1-207ENST00000429896 INTS6LQ5JSJ4 861 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms