RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 STAU1O95793 577 aaKnown RBP9.3□□□□□ -0.92
CAPN3-208ENST00000397204 MBL2P11226 248 aaPredicted RBP9.3□□□□□ -0.92
CAPN3-208ENST00000397204 ADH5P11766 374 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 HNRNPLP14866 589 aaKnown RBP eCLIP9.3□□□□□ -0.92
CAPN3-208ENST00000397204 TNNI1P19237 187 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 RDXP35241 583 aaKnown RBP9.3□□□□□ -0.92
CAPN3-208ENST00000397204 MESP2Q0VG99 397 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 NR6A1Q15406 480 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 SNRNP35Q16560 246 aaKnown RBP9.3□□□□□ -0.92
CAPN3-208ENST00000397204 MAP7D1Q3KQU3 841 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 WDR72Q3MJ13 1102 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 C4orf48Q5BLP8 95 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 LY6G5CQ5SRR4 150 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 HECTD3Q5T447 861 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 SNX30Q5VWJ9 437 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 BTBD8Q5XKL5 378 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 SLC36A4Q6YBV0 504 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 TRMT11Q7Z4G4 463 aaKnown RBP9.3□□□□□ -0.92
CAPN3-208ENST00000397204 RABEPKQ7Z6M1 372 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 TMEFF1Q8IYR6 380 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 RLN3Q8WXF3 142 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 SCNM1Q9BWG6 230 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 FGFBP2Q9BYJ0 223 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 TMEM74BQ9NUR3 256 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 COMMD8Q9NX08 183 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 IL37Q9NZH6 218 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 BCCIPQ9P287 314 aaKnown RBP eCLIP9.3□□□□□ -0.92
CAPN3-208ENST00000397204 DEC1Q9P2X7 70 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 CHORDC1Q9UHD1 332 aaPredicted RBP9.3□□□□□ -0.92
CAPN3-208ENST00000397204 MBD1Q9UIS9 605 aaPredicted RBP9.3□□□□□ -0.92
CAPN3-208ENST00000397204 PILRBQ9UKJ0 227 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 SLC6A14Q9UN76 642 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 TSC2P49815 1807 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 NBEAQ8NFP9 2946 aa9.3□□□□□ -0.92
CAPN3-208ENST00000397204 A0A087X0B3 334 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 A8MXQ7 604 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 H0Y626 953 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 EIF3DO15371 548 aaKnown RBP eCLIP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 HOXC11O43248 304 aaPredicted RBP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 AP5Z1O43299 807 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 TRIM16O95361 564 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 DLATP10515 647 aaKnown RBP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 ENGP17813 658 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 ATICP31939 592 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 HOXD13P35453 343 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 PTGER3P43115 390 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 ATXN3P54252 364 aaPredicted RBP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 TNNC1P63316 161 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 CEBPZQ03701 1054 aaKnown RBP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 GFPT1Q06210 699 aaPredicted RBP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 SEMA3BQ13214 749 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 TRPC3Q13507 836 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 HNRNPDQ14103 355 aaKnown RBP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 PSMD6Q15008 389 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 DUOXA1Q1HG43 343 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 PEAR1Q5VY43 1037 aaPredicted RBP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 LYSMD4Q5XG99 296 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 CNNM4Q6P4Q7 775 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 EPM2AIP1Q7L775 607 aaPredicted RBP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 PIP4P1Q86T03 277 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 SFTPA1Q8IWL2 248 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 PGBD3Q8N328 593 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 PHTF2Q8N3S3 785 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 B3GALNT2Q8NCR0 500 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 DEFB124Q8NES8 71 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 HMGB4Q8WW32 186 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 GATA6Q92908 595 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 B3GNT5Q9BYG0 378 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 ZNF518BQ9C0D4 1074 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 TNMDQ9H2S6 317 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 CUEDC2Q9H467 287 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 SPHK2Q9NRA0 654 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 KBTBD4Q9NVX7 518 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 CGNQ9P2M7 1197 aaKnown RBP9.29□□□□□ -0.92
CAPN3-208ENST00000397204 STARD13Q9Y3M8 1113 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 NEUROG3Q9Y4Z2 214 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 WDFY3Q8IZQ1 3526 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 TCHHQ07283 1943 aa9.29□□□□□ -0.92
CAPN3-208ENST00000397204 EML5Q05BV3 1969 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 TCRBV21S2A2A0A5A6 115 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 FAM92AA1XBS5 289 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 FAM221BA6H8Z2 402 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 TGFB1I1O43294 461 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 COCHO43405 550 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 ZNF217O75362 1048 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 TULP3O75386 442 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 SERPINF2P08697 491 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 ZDHHC11BP0C7U3 371 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 SPINK2P20155 84 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 SYT1P21579 422 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 ITPKAP23677 461 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 NTSR1P30989 418 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 MAPK8P45983 427 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 TUBP50607 506 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 AP3M2P53677 418 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 CACNA2D1P54289 1103 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 CYP24A1Q07973 514 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 SDE2Q6IQ49 451 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 FAM173BQ6P4H8 233 aa9.28□□□□□ -0.92
CAPN3-208ENST00000397204 HTR3DQ70Z44 454 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms