RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CATSPERGQ6ZRH7 1159 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 FAM183BPQ6ZVS7 135 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 AGR3Q8TD06 166 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 CCDC124Q96CT7 223 aaKnown RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 PTCD3Q96EY7 689 aaKnown RBP12.61□□□□□ -0.39
CLIP3-201ENST00000360535 TMEM176AQ96HP8 235 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 PGLYRP2Q96PD5 576 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 CYP4F11Q9HBI6 524 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 TEX264Q9Y6I9 313 aa12.61□□□□□ -0.39
CLIP3-201ENST00000360535 GPR25O00155 361 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 MAFO75444 373 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ARIH2O95376 493 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 CSH1P0DML2 217 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 CSH2P0DML3 217 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 NDST1P52848 882 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 EPHB1P54762 984 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 TREML2Q5T2D2 321 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 GADL1Q6ZQY3 521 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 RBM15BQ8NDT2 890 aaKnown RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 DEPDC1BQ8WUY9 529 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 USP6NLQ92738 828 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ZBED3Q96IU2 234 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 HOXC10Q9NYD6 342 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ARID2Q68CP9 1835 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 FAM189A1O60320 539 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ATG7O95352 703 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 KCNA3P22001 575 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 KCNA4P22459 653 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ETV4P43268 484 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 NEK3P51956 506 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 POLE2P56282 527 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 CES3Q6UWW8 571 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ISLR2Q6UXK2 745 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 CMASQ8NFW8 434 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 SKA1Q96BD8 255 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 DHRS4Q9BTZ2 278 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 NIFKQ9BYG3 293 aaKnown RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 C20orf27Q9GZN8 174 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 CDT1Q9H211 546 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 DHX35Q9H5Z1 703 aaKnown RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 PPCSQ9HAB8 311 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 SEPT10Q9P0V9 454 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ZNF646O15015 1829 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 CCDC189A1A4V9 331 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 DCAF8L1A6NGE4 600 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 PRR5-ARHGAP8B1AHC4 643 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 E7ESA3 106 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 IQCF3P0C7M6 154 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 TFE3P19532 575 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 HMGB2P26583 209 aaKnown RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 PHKA2P46019 1235 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 AP3M2P53677 418 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 SESN2P58004 480 aaPredicted RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 RPL10AP62906 217 aaKnown RBP12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ARHGAP8P85298 464 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 NOMO1Q15155 1222 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 C1orf146Q5VVC0 180 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 IER5Q5VY09 327 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 CES4AQ5XG92 561 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 FAM172AQ8WUF8 416 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 ZNF333Q96JL9 665 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 LNPEPQ9UIQ6 1025 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 TSPAN16Q9UKR8 245 aa12.6□□□□□ -0.39
CLIP3-201ENST00000360535 NDC80O14777 642 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 STAG3L1P0CL83 205 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 STIP1P31948 543 aaKnown RBP12.59□□□□□ -0.39
CLIP3-201ENST00000360535 SLC34A1Q06495 639 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 BIRC2Q13490 618 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 PEX6Q13608 980 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 ACOT1Q86TX2 421 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 CRLF3Q8IUI8 442 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 PLD5Q8N7P1 536 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 HPDLQ96IR7 371 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 SPATA33Q96N06 139 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 TSC22D3Q99576 134 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 KLC2Q9H0B6 622 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 ACSS2Q9NR19 701 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 LOC100653049A0A140TA62 436 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 APOL1O14791 398 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 MAP3K7O43318 606 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 LGR5O75473 907 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 KRT34O76011 436 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 PTPN7P35236 360 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 TFDP2Q14188 446 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 TARBP2Q15633 366 aaKnown RBP12.59□□□□□ -0.39
CLIP3-201ENST00000360535 FBXO16Q8IX29 292 aaPredicted RBP12.59□□□□□ -0.39
CLIP3-201ENST00000360535 ENDOVQ8N8Q3 282 aaKnown RBP12.59□□□□□ -0.39
CLIP3-201ENST00000360535 PPP1R36Q96LQ0 422 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 RNF157Q96PX1 679 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 BTBD7Q9P203 1132 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 PACSIN3Q9UKS6 424 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 G3BP2Q9UN86 482 aaKnown RBP12.59□□□□□ -0.39
CLIP3-201ENST00000360535 AKT3Q9Y243 479 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 TTLL3Q9Y4R7 772 aa12.59□□□□□ -0.39
CLIP3-201ENST00000360535 SOWAHBA6NEL2 793 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 TRAFD1O14545 582 aaPredicted RBP12.58□□□□□ -0.39
CLIP3-201ENST00000360535 CIB2O75838 187 aa12.58□□□□□ -0.39
CLIP3-201ENST00000360535 METTL18O95568 372 aa12.58□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms