RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ATP11AP98196 1134 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 HEATR4Q86WZ0 1026 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 NPLOC4Q8TAT6 608 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 VPS9D1Q9Y2B5 631 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 ZRANB3Q5FWF4 1079 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 IRGCQ6NXR0 463 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 PPFIBP2Q8ND30 876 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 FBXL13Q8NEE6 735 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 FAR1Q8WVX9 515 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 AUTS2Q8WXX7 1259 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 LRCH3Q96II8 777 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 CLSTN3Q9BQT9 956 aa8.73□□□□□ -1.01
HMGB1-203ENST00000341423 RFXAPO00287 272 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 PSMD3O43242 534 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 MAN1A2O60476 641 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 ATG7O95352 703 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 EIF2S1P05198 315 aaKnown RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 ASGR2P07307 311 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 IVLP07476 585 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 SETSIPP0DME0 302 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 EPHB2P29323 1055 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 PDX1P52945 283 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 SPEM2Q0P670 501 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 TRIP10Q15642 601 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 HGSNATQ68CP4 663 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 PAQR7Q86WK9 346 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 GRK7Q8WTQ7 553 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 C5orf34Q96MH7 638 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 GFM1Q96RP9 751 aaKnown RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 FAM221BA6H8Z2 402 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 C3orf70A6NLC5 250 aaPredicted RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 AP3B1O00203 1094 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 CPP00450 1065 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 PYGLP06737 847 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 MZF1P28698 734 aaPredicted RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 VPS41P49754 854 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 ELOCQ15369 112 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 SH3D19Q5HYK7 790 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 AARS2Q5JTZ9 985 aaKnown RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 RRM2BQ7LG56 351 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 VSIG10LQ86VR7 867 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 KLHL7Q8IXQ5 586 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 CCDC105Q8IYK2 499 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 FAM46DQ8NEK8 389 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 MTMR8Q96EF0 704 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 SGSM3Q96HU1 749 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 CASS4Q9NQ75 786 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 TSR3Q9UJK0 312 aaKnown RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 NEURL4Q96JN8 1562 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 A0A1W2PRU2 124 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 KPNA7A9QM74 516 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 EEF2KO00418 725 aaKnown RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 SCAMP3O14828 347 aaKnown RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 TBL1XO60907 577 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 ADH5P11766 374 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 IDSP22304 550 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 BDNFP23560 247 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 HNRNPKP61978 463 aaKnown RBP eCLIP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 GRB10Q13322 594 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 GALNT13Q8IUC8 556 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 FRS2Q8WU20 508 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 TEX12Q9BXU0 123 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 VPS16Q9H269 839 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 KDM4CQ9H3R0 1056 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 PDLIM7Q9NR12 457 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 VPS45Q9NRW7 570 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 FAM207AQ9NSI2 230 aaPredicted RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 RRN3Q9NYV6 651 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 PPIEQ9UNP9 301 aaKnown RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 DYRK1BQ9Y463 629 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 COL1A1P02452 1464 aaPredicted RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 DYNC1I1O14576 645 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 GPC4O75487 556 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 CYP2A7P20853 494 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 IRS1P35568 1242 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 CTSOP43234 321 aaPredicted RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 PPP2R2BQ00005 443 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 C19orf57Q0VDD7 668 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 ALG11Q2TAA5 492 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 NUP93Q8N1F7 819 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 DEPDC4Q8N2C3 294 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 KCNB2Q92953 911 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 NAT6Q93015 286 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 C18orf8Q96DM3 657 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 C12orf42Q96LP6 360 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 FGD4Q96M96 766 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 CMKLR1Q99788 373 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 FAM126AQ9BYI3 521 aaPredicted RBP8.72□□□□□ -1.01
HMGB1-203ENST00000341423 CDC14AQ9UNH5 594 aa8.72□□□□□ -1.01
HMGB1-203ENST00000341423 DFNA5O60443 496 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 B4GALT4O60513 344 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 NUDT14O95848 222 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 TNFP01375 233 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 SLC35G4P0C7Q5 338 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 TNFRSF4P43489 277 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 SPIRE1Q08AE8 756 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 SIGLEC14Q08ET2 396 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 VSTM1Q6UX27 236 aa8.71□□□□□ -1.01
HMGB1-203ENST00000341423 CYFIP2Q96F07 1278 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms