RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 VPS26AO75436 327 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 PSMA3P25788 255 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 OTUD4Q01804 1114 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 DCTN2Q13561 401 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 CCDC33Q8N5R6 958 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 PACSIN1Q9BY11 444 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 PKP3Q9Y446 797 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 HMGCRP04035 888 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 RPL22P35268 128 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 CACNA2D1P54289 1103 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 RRP1BQ14684 758 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 MPZL3Q6UWV2 235 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 ARHGAP22Q7Z5H3 698 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 LZTR1Q8N653 840 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 TUBGCP3Q96CW5 907 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC39A10Q9ULF5 831 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 VANGL2Q9ULK5 521 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 ZMYND8Q9ULU4 1186 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 ACOT9Q9Y305 439 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 CD3EAPO15446 510 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 PIK3CGP48736 1102 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 RTP1P59025 263 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 AMPD2Q01433 879 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 KCNA1Q09470 495 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 KRT33BQ14525 404 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 ARMCX4Q5H9R4 360 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 DEPDC1Q5TB30 811 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SNX30Q5VWJ9 437 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 HES6Q96HZ4 224 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SSU72Q9NP77 194 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 FASP25445 335 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 KCNJ1P48048 391 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC12A3P55017 1021 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 PACS2Q86VP3 889 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SRPK1Q96SB4 655 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC25A23Q9BV35 468 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 METTL5Q9NRN9 209 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 COMMD8Q9NX08 183 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 IMPAD1Q9NX62 359 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 EFR3BQ9Y2G0 817 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 ATMINO43313 823 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 DGKDQ16760 1214 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 OLFML2BQ68BL8 750 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 TAS2R42Q7RTR8 314 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 LUZP2Q86TE4 346 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC35C1Q96A29 364 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 ALG13Q9NP73 1137 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 DIABLOQ9NR28 239 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 LSM7Q9UK45 103 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 UBA6A0AVT1 1052 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 ELF3P78545 371 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 ROR2Q01974 943 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 FRG1Q14331 258 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 FAM83AQ86UY5 434 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 MAGED2Q9UNF1 606 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 A0A087X1B8 175 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 MED24O75448 989 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 CRTAMO95727 393 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 UBTFL6P0CB48 400 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 NCKAP1LP55160 1127 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 TIMM50Q3ZCQ8 353 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 KRT73Q86Y46 540 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SEPT12Q8IYM1 358 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 PARVBQ9HBI1 364 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SENP2Q9HC62 589 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 PDGFCQ9NRA1 345 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 TMX2Q9Y320 296 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC4A7Q9Y6M7 1214 aa10.6□□□□□ -0.71
CCDC88A-202ENST00000336838 ATP9BO43861 1147 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 ATP6V1C1P21283 382 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 MFSD14CQ5VZR4 134 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 APOL4Q9BPW4 351 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 HMG20AQ9NP66 347 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 FETUBQ9UGM5 382 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SESN1Q9Y6P5 492 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 DDHD2O94830 711 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 NPTX2P47972 431 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 DCAF6Q58WW2 860 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 B3GNT6Q6ZMB0 384 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 NDFIP2Q9NV92 336 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SNX9Q9Y5X1 595 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 GP5P40197 560 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 NPY2RP49146 381 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 RAB15P59190 212 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 CDH17Q12864 832 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 PDPK2PQ6A1A2 396 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 RNF135Q8IUD6 432 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SCN4BQ8IWT1 228 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 HDAC7Q8WUI4 952 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 ZNF75CPQ92670 426 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 MRIQ9BWK5 157 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 LRRC4BQ9NT99 713 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 CD274Q9NZQ7 290 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 KRT87PA6NCN2 255 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 C1DQ13901 141 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 ART4Q93070 314 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 TAF6LQ9Y6J9 622 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 CPA3P15088 417 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms