RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MAPTP10636 758 aaKnown RBP15.89■□□□□ 0.13
SHH-201ENST00000297261 NAMPTP43490 491 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 SV2AQ7L0J3 742 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 CNDP1Q96KN2 507 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 C10orf88Q9H8K7 445 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.89■□□□□ 0.13
SHH-201ENST00000297261 TFE3P19532 575 aaPredicted RBP15.88■□□□□ 0.13
SHH-201ENST00000297261 CYP2B6P20813 491 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 UBA1P22314 1058 aaKnown RBP15.88■□□□□ 0.13
SHH-201ENST00000297261 FECHP22830 423 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 MLH1P40692 756 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 MCL1Q07820 350 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 KDELC2Q7Z4H8 507 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 OR6P1Q8NGX9 317 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 USP13Q92995 863 aaPredicted RBP15.88■□□□□ 0.13
SHH-201ENST00000297261 PACSIN3Q9UKS6 424 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 PDHXO00330 501 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 TNPO2O14787 897 aaKnown RBP15.88■□□□□ 0.13
SHH-201ENST00000297261 GJB6O95452 261 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 TMEM62Q0P6H9 643 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 MFSD7Q6UXD7 560 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 ZNF677Q86XU0 584 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 WNK4Q96J92 1243 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 SRPK1Q96SB4 655 aaKnown RBP15.88■□□□□ 0.13
SHH-201ENST00000297261 GID8Q9NWU2 228 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 SMAPO00193 183 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 TGFB3P10600 412 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 STIP1P31948 543 aaKnown RBP15.88■□□□□ 0.13
SHH-201ENST00000297261 NEK2P51955 445 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 LAMC2Q13753 1193 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 INPP5AQ14642 412 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 SPOCD1Q6ZMY3 1216 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 SHOC2Q9UQ13 582 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 ATP11BQ9Y2G3 1177 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 CHD4Q14839 1912 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 ANGPT2O15123 496 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 XPOTO43592 962 aaKnown RBP15.88■□□□□ 0.13
SHH-201ENST00000297261 DAB1O75553 588 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 CCNE2O96020 404 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 FAAP100Q0VG06 881 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 MYBPC2Q14324 1141 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 PDK4Q16654 411 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 MTHFD1LQ6UB35 978 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 CLEC4FQ8N1N0 589 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 BEGAINQ9BUH8 593 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 BCORQ6W2J9 1755 aa15.88■□□□□ 0.13
SHH-201ENST00000297261 TGFB1I1O43294 461 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 ATF7IP2Q5U623 682 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 BNC2Q6ZN30 1099 aaPredicted RBP15.87■□□□□ 0.13
SHH-201ENST00000297261 MARK2Q7KZI7 788 aaKnown RBP15.87■□□□□ 0.13
SHH-201ENST00000297261 JADE3Q92613 823 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 AGAP1Q9UPQ3 857 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 SMNDC1O75940 238 aaKnown RBP eCLIP15.87■□□□□ 0.13
SHH-201ENST00000297261 CALCAP01258 141 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 FAM58BPP0C7Q3 252 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 ETS1P14921 441 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 NME3Q13232 169 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 ATP1A4Q13733 1029 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 ART4Q93070 314 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 ZNF669Q96BR6 464 aaPredicted RBP15.87■□□□□ 0.13
SHH-201ENST00000297261 LRMDAQ9H2I8 198 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 PEX1O43933 1283 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 DEAF1O75398 565 aaPredicted RBP15.87■□□□□ 0.13
SHH-201ENST00000297261 SPRP35270 261 aaPredicted RBP15.87■□□□□ 0.13
SHH-201ENST00000297261 VCPP55072 806 aaKnown RBP15.87■□□□□ 0.13
SHH-201ENST00000297261 SLC25A3Q00325 362 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 PPIL2Q13356 520 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 PTK6Q13882 451 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 IL31Q6EBC2 164 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 PLEKHA7Q6IQ23 1121 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 MCOLN2Q8IZK6 566 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 EMC1Q8N766 993 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 CDC26Q8NHZ8 85 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 FSD1LQ9BXM9 530 aa15.87■□□□□ 0.13
SHH-201ENST00000297261 ILKAPQ9H0C8 392 aaPredicted RBP15.87■□□□□ 0.13
SHH-201ENST00000297261 DMAP1Q9NPF5 467 aaPredicted RBP15.87■□□□□ 0.13
SHH-201ENST00000297261 ANKRD63C9JTQ0 380 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 THRAP10827 490 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 GARTP22102 1010 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 SKIV2L2P42285 1042 aaKnown RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 SPIRE1Q08AE8 756 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 PARP6Q2NL67 630 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 OTOAQ7RTW8 1153 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 DENND2DQ9H6A0 471 aaPredicted RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 WDR35Q9P2L0 1181 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 SLC39A10Q9ULF5 831 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 CDYLQ9Y232 598 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 MYPNQ86TC9 1320 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 KCNA4P22459 653 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 CWF19L1Q69YN2 538 aaKnown RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 EZH1Q92800 747 aaPredicted RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 TEPSINQ96N21 525 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 MAGEB2O15479 319 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 DCXO43602 365 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 S100BP04271 92 aaPredicted RBP15.86■□□□□ 0.13
SHH-201ENST00000297261 HSPA13P48723 471 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 AP3M2P53677 418 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 CUL2Q13617 745 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 WDR60Q8WVS4 1066 aa15.86■□□□□ 0.13
SHH-201ENST00000297261 PCDH9Q9HC56 1237 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms