RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ZFYVE27Q5T4F4 411 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 FAM109BQ6ICB4 259 aaPredicted RBP21.04■□□□□ 0.96
CLN3-250ENST00000636839 ADAM32Q8TC27 787 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 TBCBQ99426 244 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 SEPT5Q99719 369 aaPredicted RBP21.04■□□□□ 0.96
CLN3-250ENST00000636839 RHOXF2Q9BQY4 288 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 DDX23Q9BUQ8 820 aaKnown RBP21.04■□□□□ 0.96
CLN3-250ENST00000636839 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN3-250ENST00000636839 RNF14Q9UBS8 474 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 USP18Q9UMW8 372 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN3-250ENST00000636839 USP3Q9Y6I4 520 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 CHD7Q9P2D1 2997 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 CCDC85CA6NKD9 419 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 GRXCR1A8MXD5 290 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 HSF2BPO75031 334 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 RNF8O76064 485 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 TRUB2O95900 331 aaKnown RBP21.04■□□□□ 0.96
CLN3-250ENST00000636839 SCNN1AP37088 669 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 OTUD1Q5VV17 481 aaPredicted RBP21.04■□□□□ 0.96
CLN3-250ENST00000636839 SLC8B1Q6J4K2 584 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 SCYL2Q6P3W7 929 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 DDX53Q86TM3 631 aaKnown RBP21.04■□□□□ 0.96
CLN3-250ENST00000636839 KATNAL2Q8IYT4 538 aa21.04■□□□□ 0.96
CLN3-250ENST00000636839 FUBP3Q96I24 572 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN3-250ENST00000636839 LBHD1Q9BQE6 289 aaPredicted RBP21.04■□□□□ 0.96
CLN3-250ENST00000636839 SYNJ2BP-COX16A0A087WUM0 186 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 KRIT1O00522 736 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 TLL1O43897 1013 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 FGF18O76093 207 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 FBXO21O94952 628 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 ARHGEF15O94989 841 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 CD48P09326 243 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 MATKP42679 507 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 DSG1Q02413 1049 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 ADCY2Q08462 1091 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 MGAT5BQ3V5L5 792 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 PM20D1Q6GTS8 502 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 CCDC50Q8IVM0 306 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 KLHL23Q8NBE8 558 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 RAD9AQ99638 391 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 GPATCH2LQ9NWQ4 482 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 COX16Q9P0S2 106 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 TTC7AQ9ULT0 858 aaPredicted RBP21.03■□□□□ 0.96
CLN3-250ENST00000636839 KIAA1671Q9BY89 1806 aa21.03■□□□□ 0.96
CLN3-250ENST00000636839 ZRANB2O95218 330 aaKnown RBP eCLIP21.02■□□□□ 0.96
CLN3-250ENST00000636839 KRT1P04264 644 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 RARAP10276 462 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 KRT10P13645 584 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 GLUD2P49448 558 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 MTMR3Q13615 1198 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 SEL1L2Q5TEA6 688 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 MFSD7Q6UXD7 560 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 SLC13A5Q86YT5 568 aaPredicted RBP21.02■□□□□ 0.96
CLN3-250ENST00000636839 KLHL7Q8IXQ5 586 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 HDAC7Q8WUI4 952 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 HSPH1Q92598 858 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 SLC2A13Q96QE2 648 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 POPDC2Q9HBU9 364 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 LCMT1Q9UIC8 334 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 BACE2Q9Y5Z0 518 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 DAB1O75553 588 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 RALAP11233 206 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 LRRC38Q5VT99 294 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 VSTM1Q6UX27 236 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 ARCQ7LC44 396 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 CENPIQ92674 756 aaPredicted RBP21.02■□□□□ 0.96
CLN3-250ENST00000636839 PNPLA8Q9NP80 782 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 PCDHB12Q9Y5F1 795 aa21.02■□□□□ 0.96
CLN3-250ENST00000636839 C3orf70A6NLC5 250 aaPredicted RBP21.01■□□□□ 0.95
CLN3-250ENST00000636839 SEC24AO95486 1093 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 LTFP02788 710 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 NCAM1P13591 858 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 PCK1P35558 622 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 PTPN9P43378 593 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 SMC1AQ14683 1233 aaKnown RBP21.01■□□□□ 0.95
CLN3-250ENST00000636839 ACAP1Q15027 740 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 BSPRYQ5W0U4 402 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 EXD1Q8NHP7 514 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 CLP1Q92989 425 aaKnown RBP21.01■□□□□ 0.95
CLN3-250ENST00000636839 C8orf48Q96LL4 319 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 SLITRK1Q96PX8 696 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 KRT12Q99456 494 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 LRRC1Q9BTT6 524 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 HERC2P3Q9BVR0 1158 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 DDX47Q9H0S4 455 aaKnown RBP21.01■□□□□ 0.95
CLN3-250ENST00000636839 ANKZF1Q9H8Y5 726 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 TMPRSS4Q9NRS4 437 aa21.01■□□□□ 0.95
CLN3-250ENST00000636839 LRRD1A4D1F6 860 aa21■□□□□ 0.95
CLN3-250ENST00000636839 CAPN15O75808 1086 aa21■□□□□ 0.95
CLN3-250ENST00000636839 HAPLN1P10915 354 aaPredicted RBP21■□□□□ 0.95
CLN3-250ENST00000636839 MAGEA11P43364 429 aa21■□□□□ 0.95
CLN3-250ENST00000636839 SULT1E1P49888 294 aa21■□□□□ 0.95
CLN3-250ENST00000636839 SIX1Q15475 284 aaPredicted RBP21■□□□□ 0.95
CLN3-250ENST00000636839 SCD5Q86SK9 330 aa21■□□□□ 0.95
CLN3-250ENST00000636839 GIPC2Q8TF65 315 aa21■□□□□ 0.95
CLN3-250ENST00000636839 SLC9A7Q96T83 725 aa21■□□□□ 0.95
CLN3-250ENST00000636839 NPY6RQ99463 290 aa21■□□□□ 0.95
CLN3-250ENST00000636839 NMUR1Q9HB89 426 aa21■□□□□ 0.95
CLN3-250ENST00000636839 NUDT5Q9UKK9 219 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms