RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 KCNH2Q12809 1159 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 SF3A1Q15459 793 aaKnown RBP14.84□□□□□ -0.03
SNX1-214ENST00000625244 NUDT18Q6ZVK8 323 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 OSTM1Q86WC4 334 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 TMEM25Q86YD3 366 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 TMEM176AQ96HP8 235 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 SPATA17Q96L03 361 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 NRSN2Q9GZP1 204 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 USP36Q9P275 1121 aaKnown RBP14.84□□□□□ -0.03
SNX1-214ENST00000625244 TBC1D14Q9P2M4 693 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 FTSJ1Q9UET6 329 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 C2CD2Q9Y426 696 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 TCHHQ07283 1943 aa14.84□□□□□ -0.03
SNX1-214ENST00000625244 LRRK2Q5S007 2527 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 PRRT4C9JH25 899 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 BRINP1O60477 761 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 MBL2P11226 248 aaPredicted RBP14.83□□□□□ -0.04
SNX1-214ENST00000625244 MAGEA11P43364 429 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 ACOT2P49753 483 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 CSRP3P50461 194 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 ANO4Q32M45 955 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 PKDCCQ504Y2 493 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 COLEC12Q5KU26 742 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 SLC39A4Q6P5W5 647 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 USP49Q70CQ1 688 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 METTL3Q86U44 580 aaKnown RBP14.83□□□□□ -0.04
SNX1-214ENST00000625244 ERICH1Q86X53 443 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 ENGASEQ8NFI3 743 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 FUBP3Q96I24 572 aaKnown RBP eCLIP14.83□□□□□ -0.04
SNX1-214ENST00000625244 TIPINQ9BVW5 301 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 ASB7Q9H672 318 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 CPNE5Q9HCH3 593 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 ITM2CQ9NQX7 267 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 PDRG1Q9NUG6 133 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 KCNG1Q9UIX4 513 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 PCDHGA1Q9Y5H4 931 aa14.83□□□□□ -0.04
SNX1-214ENST00000625244 E2F8A0AVK6 867 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 PP2D1A8MPX8 630 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 CBX4O00257 560 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 PCDHGA12O60330 932 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 ATP2C2O75185 946 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 PIGRP01833 764 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 GRIK1P39086 918 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 AFF3P51826 1226 aaKnown RBP14.82□□□□□ -0.04
SNX1-214ENST00000625244 NCKAP1LP55160 1127 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 IL9RQ01113 521 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 MYL7Q01449 175 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 ARHGAP40Q5TG30 622 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 HES3Q5TGS1 186 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 SCARA3Q6AZY7 606 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 GRAMD4Q6IC98 578 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 DENND5BQ6ZUT9 1274 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 BBS7Q8IWZ6 715 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 C4orf32Q8N8J7 132 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 ZFRQ96KR1 1074 aaKnown RBP14.82□□□□□ -0.04
SNX1-214ENST00000625244 TTLL2Q9BWV7 592 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 MKRN2Q9H000 416 aaKnown RBP14.82□□□□□ -0.04
SNX1-214ENST00000625244 SPHK2Q9NRA0 654 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 DNAJC17Q9NVM6 304 aaKnown RBP14.82□□□□□ -0.04
SNX1-214ENST00000625244 ANKRD6Q9Y2G4 727 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 PCDHB6Q9Y5E3 794 aa14.82□□□□□ -0.04
SNX1-214ENST00000625244 NPHP3-ACAD11A0A0J9YXS1 232 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 H0Y8X5 98 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 BDNFP23560 247 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 CCT8P50990 548 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 TPMTP51580 245 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 DNAJC3Q13217 504 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 FUT11Q495W5 492 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 FAM171BQ6P995 826 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 LAYNQ6UX15 382 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 DDX42Q86XP3 938 aaKnown RBP eCLIP14.81□□□□□ -0.04
SNX1-214ENST00000625244 TTC9Q92623 222 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 WBP2Q969T9 261 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 OTUB2Q96DC9 234 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 ZNF560Q96MR9 790 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 TRIM9Q9C026 710 aa14.81□□□□□ -0.04
SNX1-214ENST00000625244 ENC1O14682 589 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 HUS1O60921 280 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 NTRK1P04629 796 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 ACTN2P35609 894 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 PPP3CCP48454 512 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 TAF10Q12962 218 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 TBC1D25Q3MII6 688 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 KCNT1Q5JUK3 1230 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 TMEM86AQ8N2M4 240 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 IGSF22Q8N9C0 903 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 SCFD1Q8WVM8 642 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 KCNN1Q92952 543 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 IGSF8Q969P0 613 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 MYLPFQ96A32 169 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 NAF1Q96HR8 494 aaKnown RBP14.8□□□□□ -0.04
SNX1-214ENST00000625244 TM6SF1Q9BZW5 370 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 TRIM4Q9C037 500 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 MAGEC2Q9UBF1 373 aaPredicted RBP14.8□□□□□ -0.04
SNX1-214ENST00000625244 IL17BQ9UHF5 180 aa14.8□□□□□ -0.04
SNX1-214ENST00000625244 TISP43B9A030 160 aa14.79□□□□□ -0.04
SNX1-214ENST00000625244 ANKRD63C9JTQ0 380 aa14.79□□□□□ -0.04
SNX1-214ENST00000625244 H0YCG3 227 aa14.79□□□□□ -0.04
SNX1-214ENST00000625244 GFRA2O00451 464 aa14.79□□□□□ -0.04
SNX1-214ENST00000625244 GABRDO14764 452 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms