RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 MINPP1Q9UNW1 487 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 ROBO2Q9HCK4 1378 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 EXTL3O43909 919 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 RARAP10276 462 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 PTGER2P43116 358 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 SULT1E1P49888 294 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 CCNA1P78396 465 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 MFSD4BQ5TF39 518 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 DENND1BQ6P3S1 775 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 PHF21AQ96BD5 680 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 AGAP3Q96P47 875 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 H3BNX3 289 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 VWA5AO00534 786 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 MAGEB2O15479 319 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 RFX5P48382 616 aaPredicted RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 ZNF543Q08ER8 600 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 NME3Q13232 169 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 SMAD1Q15797 465 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 RNF220Q5VTB9 566 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 DUPD1Q68J44 220 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 DSTYKQ6XUX3 929 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 FAM9CQ8IZT9 166 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 ART4Q93070 314 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 LRRC40Q9H9A6 602 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 SARS2Q9NP81 518 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 GABBR1Q9UBS5 961 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 KLHL20Q9Y2M5 609 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 SQORQ9Y6N5 450 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 SUPT3HB4E1H0 165 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 ZNF197O14709 1029 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 UBDO15205 165 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 ALOX12P18054 663 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 MXD4Q14582 209 aaPredicted RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 ZC2HC1CQ53FD0 456 aaPredicted RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 PDZK1Q5T2W1 519 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 RC3H1Q5TC82 1133 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 BROXQ5VW32 411 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 SCFD2Q8WU76 684 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 CDRT15Q96T59 188 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 CACNA2D2Q9NY47 1150 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 PTTG2Q9NZH5 202 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 NEXMIFQ5QGS0 1516 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 ZMYM2Q9UBW7 1377 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 CCNA2P20248 432 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 ZNF268Q14587 947 aaPredicted RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 NTRK3Q16288 839 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 EXOC3L1Q86VI1 746 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 SLC44A5Q8NCS7 719 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 USP13Q92995 863 aaPredicted RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 HES6Q96HZ4 224 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 RMDN3Q96TC7 470 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 TRIM8Q9BZR9 551 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 PLEKHA5Q9HAU0 1116 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 CLK4Q9HAZ1 481 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 FAM53CQ9NYF3 392 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 PEX1O43933 1283 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 RPL10AP62906 217 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 MAPK11Q15759 364 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 CLEC16AQ2KHT3 1053 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 GRTP1Q5TC63 336 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 ABRAXAS1Q6UWZ7 409 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 GINS4Q9BRT9 223 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 UBE2OQ9C0C9 1292 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 H2AFY2Q9P0M6 372 aaPredicted RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 EIF3LQ9Y262 564 aaKnown RBP9.19□□□□□ -0.94
VCL-206ENST00000623461 SIK3Q9Y2K2 1263 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 PCDHA10Q9Y5I2 948 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 V9GYQ6 96 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 TULP4Q9NRJ4 1543 aa9.19□□□□□ -0.94
VCL-206ENST00000623461 DGAT1O75907 488 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ACADSBP45954 432 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 SLC22A9Q8IVM8 553 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.18□□□□□ -0.94
VCL-206ENST00000623461 ZNF333Q96JL9 665 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 CHID1Q9BWS9 393 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 PREX1Q8TCU6 1659 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 FAM20BO75063 409 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 SOAT2O75908 522 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 IL5RAQ01344 420 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 GPAT2Q6NUI2 795 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 MOXD1Q6UVY6 613 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 EID3Q8N140 333 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 FAM13CQ8NE31 585 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 VTA1Q9NP79 307 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 IARS2Q9NSE4 1012 aaKnown RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 MBD2Q9UBB5 411 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 BTBD3Q9Y2F9 522 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 DLC1Q96QB1 1528 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 C5orf58C9J3I9 102 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ATP6V1B2P21281 511 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 KCTD2Q14681 263 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 AGKQ53H12 422 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 SPDYAQ5MJ70 313 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 USE1Q9NZ43 259 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 PRPF19Q9UMS4 504 aaKnown RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 USP31Q70CQ4 1352 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 SNAP91O60641 907 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 SERPINA6P08185 405 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 RBP1P09455 135 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms