RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 TRMT13Q9NUP7 481 aaKnown RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 TMEM189-UBE2V1I3L0A0 370 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 SGK1O00141 431 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 ARVCFO00192 962 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 APOL1O14791 398 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 EIF3HO15372 352 aaKnown RBP eCLIP17.07■□□□□ 0.32
LDB3-208ENST00000623007 TRAPPC3O43617 180 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 B3GAT3O94766 335 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 LCP1P13796 627 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 DPYSL3Q14195 570 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 KCNT1Q5JUK3 1230 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 LHX8Q68G74 356 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 KDM7AQ6ZMT4 941 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 LEKR1Q6ZMV7 388 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 KHSRPQ92945 711 aaKnown RBP eCLIP17.07■□□□□ 0.32
LDB3-208ENST00000623007 FAF2Q96CS3 445 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 CFAP57Q96MR6 1250 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 POPDC2Q9HBU9 364 aa17.07■□□□□ 0.32
LDB3-208ENST00000623007 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.07■□□□□ 0.32
LDB3-208ENST00000623007 TDRD15B5MCY1 1934 aaKnown RBP17.06■□□□□ 0.32
LDB3-208ENST00000623007 SRRM3A6NNA2 597 aaPredicted RBP17.06■□□□□ 0.32
LDB3-208ENST00000623007 RIPK2O43353 540 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 FAM189BP81408 668 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 ATP11AP98196 1134 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 XRCC4Q13426 336 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 NOMO1Q15155 1222 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 LLGL1Q15334 1064 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 CDO1Q16878 200 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 KRT71Q3SY84 523 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 MDH1BQ5I0G3 518 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 SCYL2Q6P3W7 929 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 PPP1R21Q6ZMI0 780 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 CLEC20AQ6ZU45 233 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 APBB2Q92870 758 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 LPPQ93052 612 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 SUSD3Q96L08 255 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 FERMT1Q9BQL6 677 aa17.06■□□□□ 0.32
LDB3-208ENST00000623007 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.05■□□□□ 0.32
LDB3-208ENST00000623007 C9IYK1 514 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 TULP2O00295 520 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 DNM1LO00429 736 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 MGEA5O60502 916 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 F9P00740 461 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 HDAC4P56524 1084 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 EIF3EP60228 445 aaKnown RBP17.05■□□□□ 0.32
LDB3-208ENST00000623007 TSPY1Q01534 308 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 DMTNQ08495 405 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 ADIGQ0VDE8 80 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 C15orf59Q2T9L4 293 aaPredicted RBP17.05■□□□□ 0.32
LDB3-208ENST00000623007 P3H1Q32P28 736 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 TTMPQ5BVD1 217 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 SLC9A4Q6AI14 798 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 C4orf50Q6ZRC1 276 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 ZNF771Q7L3S4 317 aaPredicted RBP17.05■□□□□ 0.32
LDB3-208ENST00000623007 BEND5Q7L4P6 421 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 ANKS1BQ7Z6G8 1248 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 FAM35AQ86V20 835 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 NT5C3BQ969T7 300 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 CNOT10Q9H9A5 744 aaKnown RBP17.05■□□□□ 0.32
LDB3-208ENST00000623007 CSNK1G1Q9HCP0 422 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 KRT82Q9NSB4 513 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 MIOSQ9NXC5 875 aa17.05■□□□□ 0.32
LDB3-208ENST00000623007 FRMPD3Q5JV73 1810 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 HOXA2O43364 376 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 TCEA3O75764 348 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 GRAP2O75791 330 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 TTC4O95801 387 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 ABHD2P08910 425 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 SELPP16109 830 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 NR1D1P20393 614 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 ARL4AP40617 200 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 ROR1Q01973 937 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 RAB41Q5JT25 222 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 TRNP1Q6NT89 227 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 FAM171BQ6P995 826 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 CYP4V2Q6ZWL3 525 aaPredicted RBP17.04■□□□□ 0.32
LDB3-208ENST00000623007 CNPY4Q8N129 248 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 RNF169Q8NCN4 708 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 SLC2A13Q96QE2 648 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 PEBP4Q96S96 227 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 SNRNP25Q9BV90 132 aaKnown RBP17.04■□□□□ 0.32
LDB3-208ENST00000623007 PCDHB8Q9UN66 801 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 SF3B1O75533 1304 aaKnown RBP eCLIP17.04■□□□□ 0.32
LDB3-208ENST00000623007 CASTOR2A6NHX0 329 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 MEIS3P2A8K0S8 358 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 PITPNM1O00562 1244 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 SHOX2O60902 331 aaPredicted RBP17.04■□□□□ 0.32
LDB3-208ENST00000623007 AP1G2O75843 785 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 AGTP01019 485 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 RBP3P10745 1247 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 TSHRP16473 764 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 CAPN2P17655 700 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 TKTP29401 623 aaKnown RBP17.04■□□□□ 0.32
LDB3-208ENST00000623007 LMAN1P49257 510 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 BCAR1P56945 870 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 GPS1Q13098 491 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 SLC29A2Q14542 456 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 TIGD5Q53EQ6 642 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 ANKRD20A8PQ5CZ79 823 aa17.04■□□□□ 0.32
LDB3-208ENST00000623007 INTS6LQ5JSJ4 861 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms