RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 MTAPQ13126 283 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 ITPRIPL2Q3MIP1 535 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 SGO2Q562F6 1265 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 HSP90AA4PQ58FG1 418 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 PPM1JQ5JR12 505 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 ARHGAP17Q68EM7 881 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 TMEM270Q6UE05 265 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 RRAGAQ7L523 313 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 IRF2BP1Q8IU81 584 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 FAM114A1Q8IWE2 563 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 FAM83CQ9BQN1 747 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 OSBPL6Q9BZF3 934 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 RNF38Q9H0F5 515 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 THAP9Q9H5L6 903 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 C8orf33Q9H7E9 229 aaPredicted RBP16.87■□□□□ 0.29
BRCA1-228ENST00000618469 HPS4Q9NQG7 708 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 CHORDC1Q9UHD1 332 aaPredicted RBP16.87■□□□□ 0.29
BRCA1-228ENST00000618469 PCDHB4Q9Y5E5 795 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 WNT6Q9Y6F9 365 aa16.87■□□□□ 0.29
BRCA1-228ENST00000618469 PRR5-ARHGAP8B1AHC4 643 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 LEFTY2O00292 366 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 TCF3P15923 654 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 SDHBP21912 280 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 ARHGAP8P85298 464 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 GCNT1Q02742 428 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 RUNX3Q13761 415 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 PDGFRLQ15198 375 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 HECTD3Q5T447 861 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 TXNDC11Q6PKC3 985 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 PRR23BQ6ZRT6 265 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 RBM43Q6ZSC3 357 aaKnown RBP16.86■□□□□ 0.29
BRCA1-228ENST00000618469 GPR161Q8N6U8 529 aaKnown RBP16.86■□□□□ 0.29
BRCA1-228ENST00000618469 EHBP1Q8NDI1 1231 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 OSCP1Q8WVF1 389 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 NELL2Q99435 816 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 RTKNQ9BST9 563 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 CRACR2AQ9BSW2 395 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 NACA2Q9H009 215 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 CCSER2Q9H7U1 834 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 TLR8Q9NR97 1041 aaKnown RBP16.86■□□□□ 0.29
BRCA1-228ENST00000618469 DUS2Q9NX74 493 aaKnown RBP16.86■□□□□ 0.29
BRCA1-228ENST00000618469 GMEB2Q9UKD1 530 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 TSPAN16Q9UKR8 245 aa16.86■□□□□ 0.29
BRCA1-228ENST00000618469 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.85■□□□□ 0.29
BRCA1-228ENST00000618469 SCAMP3O14828 347 aaKnown RBP16.85■□□□□ 0.29
BRCA1-228ENST00000618469 NCAM2O15394 837 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 COCHO43405 550 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 ADRB1P08588 477 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 ZDHHC11BP0C7U3 371 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 TUBP50607 506 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 BCAT1P54687 386 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 MLLT6P55198 1093 aaPredicted RBP16.85■□□□□ 0.29
BRCA1-228ENST00000618469 SLC8A3P57103 927 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 ZXDBP98169 803 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 FZD5Q13467 585 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 SNX30Q5VWJ9 437 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 C1orf228Q6PIY5 440 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 TRIM65Q6PJ69 517 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 TTC30AQ86WT1 665 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 RALGPS2Q86X27 583 aaPredicted RBP16.85■□□□□ 0.29
BRCA1-228ENST00000618469 CPA6Q8N4T0 437 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 RBBP8NLQ8NC74 664 aaPredicted RBP16.85■□□□□ 0.29
BRCA1-228ENST00000618469 CFAP97Q9P2B7 532 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 HESX1Q9UBX0 185 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 SCML2Q9UQR0 700 aa16.85■□□□□ 0.29
BRCA1-228ENST00000618469 O00370 1275 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 TLR5O60602 858 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 PAEPP09466 180 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 VDRP11473 427 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 MAGEA9P43362 315 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 PGFP49763 221 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 KIF11P52732 1056 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 PON2Q15165 354 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 MAN2A1Q16706 1144 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 PIGZQ86VD9 579 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 DDX42Q86XP3 938 aaKnown RBP eCLIP16.84■□□□□ 0.29
BRCA1-228ENST00000618469 ANKRD52Q8NB46 1076 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 NELL1Q92832 810 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 ATP2A3Q93084 1043 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 CLDN23Q96B33 292 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 KREMEN1Q96MU8 473 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 CHD8Q9HCK8 2581 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 F5P12259 2224 aa16.84■□□□□ 0.29
BRCA1-228ENST00000618469 A0A1W2PQH9 124 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 OTOL1A6NHN0 477 aaPredicted RBP16.83■□□□□ 0.28
BRCA1-228ENST00000618469 M0QYV0 167 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 GDF9O60383 454 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 CALCAP01258 141 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 KRT5P13647 590 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 PRKCSHP14314 528 aaPredicted RBP16.83■□□□□ 0.28
BRCA1-228ENST00000618469 BRD2P25440 801 aaKnown RBP16.83■□□□□ 0.28
BRCA1-228ENST00000618469 RPS9P46781 194 aaKnown RBP16.83■□□□□ 0.28
BRCA1-228ENST00000618469 PDE4CQ08493 712 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 BST2Q10589 180 aaKnown RBP16.83■□□□□ 0.28
BRCA1-228ENST00000618469 SRSF5Q13243 272 aaKnown RBP16.83■□□□□ 0.28
BRCA1-228ENST00000618469 EML3Q32P44 896 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 CCDC183Q5T5S1 534 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 GBP6Q6ZN66 633 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 CCDC186Q7Z3E2 898 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 ZNF687Q8N1G0 1237 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms