RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CFAP46Q8IYW2 2715 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 SPAG17Q6Q759 2223 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 O00370 1275 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 ARHGAP6O43182 974 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 ADAM12O43184 909 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 LCA5LO95447 670 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 CYP1A1P04798 512 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 CD19P15391 556 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 PCSK1P29120 753 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 CDR1P51861 262 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 KIF11P52732 1056 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 DSG1Q02413 1049 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 CCDC6Q16204 474 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 PKDCCQ504Y2 493 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 SGO2Q562F6 1265 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 TDRD12Q587J7 1177 aaKnown RBP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 INTS6LQ5JSJ4 861 aaKnown RBP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 DENND1BQ6P3S1 775 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 PRSS55Q6UWB4 352 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 LCLAT1Q6UWP7 414 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 TOGARAM2Q6ZUX3 1019 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 DNAAF5Q86Y56 855 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 FUKQ8N0W3 1084 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 VPS52Q8N1B4 723 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 THEM5Q8N1Q8 247 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 C12orf50Q8NA57 414 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 MYCBPAPQ8TBZ2 947 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 CLDN23Q96B33 292 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 TNIP3Q96KP6 325 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 CCDC42Q96M95 316 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 KLHL5Q96PQ7 755 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 MYADMQ96S97 322 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 HNRNPABQ99729 332 aaKnown RBP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 CLSTN3Q9BQT9 956 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 HERC2P3Q9BVR0 1158 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 B3GNT5Q9BYG0 378 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 FAM49BQ9NUQ9 324 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 SPTLC3Q9NUV7 552 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 TAS2R14Q9NYV8 317 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 GTF3C4Q9UKN8 822 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 PCDHGC3Q9UN70 934 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 REXO2Q9Y3B8 237 aaKnown RBP9.98□□□□□ -0.81
TRIM28-208ENST00000597172 GPSM3Q9Y4H4 160 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 COL4A3Q01955 1670 aa9.98□□□□□ -0.81
TRIM28-208ENST00000597172 PCNX2A6NKB5 2137 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 EIF3CLB5ME19 914 aaKnown RBP9.97□□□□□ -0.81
TRIM28-208ENST00000597172 H7C4K7 107 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 CLDN5O00501 218 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 NCAM2O15394 837 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 AKR1B10O60218 316 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 MICAL2O94851 1124 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 NDUFA10O95299 355 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 OR4Q2P0C623 313 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 UNGP13051 313 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-208ENST00000597172 CCDC130P13994 396 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 RPL17P18621 184 aaKnown RBP9.97□□□□□ -0.81
TRIM28-208ENST00000597172 ANXA13P27216 316 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 GPD2P43304 727 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 NOVA1P51513 510 aaKnown RBP9.97□□□□□ -0.81
TRIM28-208ENST00000597172 GPC5P78333 572 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 CYP27A1Q02318 531 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 PRKCQQ04759 706 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 ZNF252P-AS1Q0IIN9 211 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 C19orf57Q0VDD7 668 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 SF3A2Q15428 464 aaKnown RBP9.97□□□□□ -0.81
TRIM28-208ENST00000597172 MLF2Q15773 248 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-208ENST00000597172 SLC18A3Q16572 532 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 CLEC16AQ2KHT3 1053 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 CTXN3Q4LDR2 81 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 SLC44A4Q53GD3 710 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 MDH1BQ5I0G3 518 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 ANKS3Q6ZW76 656 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 TTC30AQ86WT1 665 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 PASD1Q8IV76 773 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 ACRBPQ8NEB7 543 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 UBA3Q8TBC4 463 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 SLC2A14Q8TDB8 520 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 AUTS2Q8WXX7 1259 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 PIK3R5Q8WYR1 880 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 PCED1BQ96HM7 432 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 EIF3CQ99613 913 aaKnown RBP9.97□□□□□ -0.81
TRIM28-208ENST00000597172 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.97□□□□□ -0.81
TRIM28-208ENST00000597172 ZBP1Q9H171 429 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 LHX5Q9H2C1 402 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 WDR6Q9NNW5 1121 aaKnown RBP9.97□□□□□ -0.81
TRIM28-208ENST00000597172 LTB4R2Q9NPC1 389 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 MTRRQ9UBK8 725 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 CYTH4Q9UIA0 394 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 NAGPAQ9UK23 515 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 TSPAN16Q9UKR8 245 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 BACE2Q9Y5Z0 518 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 MYO9AB2RTY4 2548 aa9.97□□□□□ -0.81
TRIM28-208ENST00000597172 NOTCH2Q04721 2471 aa9.96□□□□□ -0.81
TRIM28-208ENST00000597172 TSC2P49815 1807 aa9.96□□□□□ -0.81
TRIM28-208ENST00000597172 VWA8A3KMH1 1905 aa9.96□□□□□ -0.81
TRIM28-208ENST00000597172 GREB1Q4ZG55 1949 aa9.96□□□□□ -0.81
TRIM28-208ENST00000597172 A0A0U1RQJ8 604 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms