RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 ATG4AQ8WYN0 398 aa18.88■□□□□ 0.61
COMMD4-208ENST00000563220 HSPH1Q92598 858 aa18.88■□□□□ 0.61
COMMD4-208ENST00000563220 CWH43Q9H720 699 aa18.88■□□□□ 0.61
COMMD4-208ENST00000563220 DMAP1Q9NPF5 467 aaPredicted RBP18.88■□□□□ 0.61
COMMD4-208ENST00000563220 CNGB3Q9NQW8 809 aa18.88■□□□□ 0.61
COMMD4-208ENST00000563220 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.88■□□□□ 0.61
COMMD4-208ENST00000563220 CALCOCO1Q9P1Z2 691 aa18.88■□□□□ 0.61
COMMD4-208ENST00000563220 PCYOX1Q9UHG3 505 aa18.88■□□□□ 0.61
COMMD4-208ENST00000563220 SF3B1O75533 1304 aaKnown RBP eCLIP18.87■□□□□ 0.61
COMMD4-208ENST00000563220 YJEFN3A6XGL0 299 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 E7ENQ6 273 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 ATP8B1O43520 1251 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 PRPSAP2O60256 369 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 ACRP10323 421 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 RAG1P15918 1043 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 PTPN7P35236 360 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 CARSP49589 748 aaKnown RBP18.87■□□□□ 0.61
COMMD4-208ENST00000563220 TFDP3Q5H9I0 405 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 MFSD5Q6N075 450 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 C4orf50Q6ZRC1 276 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 TBCBQ99426 244 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 TRIM51Q9BSJ1 452 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 DCLK3Q9C098 648 aa18.87■□□□□ 0.61
COMMD4-208ENST00000563220 DAB1O75553 588 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 FYNP06241 537 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 TNFRSF8P28908 595 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 PITX1P78337 314 aaPredicted RBP18.86■□□□□ 0.61
COMMD4-208ENST00000563220 DEFB103AP81534 67 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 TAZQ16635 292 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 CTXN3Q4LDR2 81 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 SYPL2Q5VXT5 272 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 BHLHA9Q7RTU4 235 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 DCP1BQ8IZD4 617 aaKnown RBP18.86■□□□□ 0.61
COMMD4-208ENST00000563220 KCTD6Q8NC69 237 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 SLC2A13Q96QE2 648 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 FAM118BQ9BPY3 351 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 MICAL3Q7RTP6 2002 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 ENDOD1O94919 500 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 ZBED1O96006 694 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 FNTAP49354 379 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 ARSEP51690 589 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 SNX1Q13596 522 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 DHX34Q14147 1143 aaKnown RBP18.86■□□□□ 0.61
COMMD4-208ENST00000563220 DCAF6Q58WW2 860 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 RTP2Q5QGT7 225 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 DDX42Q86XP3 938 aaKnown RBP eCLIP18.86■□□□□ 0.61
COMMD4-208ENST00000563220 JAMLQ86YT9 394 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 IFT81Q8WYA0 676 aa18.86■□□□□ 0.61
COMMD4-208ENST00000563220 FAM187AA6NFU0 413 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 TJP3O95049 919 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 EN2P19622 333 aaPredicted RBP18.85■□□□□ 0.61
COMMD4-208ENST00000563220 NOS2P35228 1153 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 GRIK1P39086 918 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 SLC25A52Q3SY17 297 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 BOLA3Q53S33 107 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 OTUD1Q5VV17 481 aaPredicted RBP18.85■□□□□ 0.61
COMMD4-208ENST00000563220 PM20D1Q6GTS8 502 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 FAM117BQ6P1L5 589 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 RSPO2Q6UXX9 243 aaPredicted RBP18.85■□□□□ 0.61
COMMD4-208ENST00000563220 CCDC105Q8IYK2 499 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 NT5C3BQ969T7 300 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 ZNF689Q96CS4 500 aaPredicted RBP18.85■□□□□ 0.61
COMMD4-208ENST00000563220 POPDC2Q9HBU9 364 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 PNPLA8Q9NP80 782 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.85■□□□□ 0.613e-10■■■■■ 33.7
COMMD4-208ENST00000563220 GPATCH2LQ9NWQ4 482 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 ABI2Q9NYB9 513 aaPredicted RBP18.85■□□□□ 0.61
COMMD4-208ENST00000563220 NAALADL1Q9UQQ1 740 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 USP3Q9Y6I4 520 aa18.85■□□□□ 0.61
COMMD4-208ENST00000563220 TBC1D4O60343 1298 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 EFEMP2O95967 443 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 ALDH7A1P49419 539 aaKnown RBP18.84■□□□□ 0.61
COMMD4-208ENST00000563220 ELAVL2Q12926 359 aaKnown RBP18.84■□□□□ 0.61
COMMD4-208ENST00000563220 CCNG2Q16589 344 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 CA9Q16790 459 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 FNDC1Q4ZHG4 1894 aaPredicted RBP18.84■□□□□ 0.61
COMMD4-208ENST00000563220 ZC3H12AQ5D1E8 599 aaKnown RBP18.84■□□□□ 0.61
COMMD4-208ENST00000563220 ZNF280DQ6N043 979 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 STRADAQ7RTN6 431 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 BNIPLQ7Z465 357 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 TMEM199Q8N511 208 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 SCAMP5Q8TAC9 235 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 AENQ8WTP8 325 aaKnown RBP18.84■□□□□ 0.61
COMMD4-208ENST00000563220 SEC14L1Q92503 715 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 NPY6RQ99463 290 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 NCAPGQ9BPX3 1015 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 NFU1Q9UMS0 254 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 EFR3BQ9Y2G0 817 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 OR6C75A6NL08 312 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 TNFRSF10BO14763 440 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 SASH3O75995 380 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 AMHP03971 560 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 CAPN2P17655 700 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 DESP17661 470 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 SULT1E1P49888 294 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 CDH6P55285 790 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 WDR5P61964 334 aaKnown RBP18.84■□□□□ 0.61
COMMD4-208ENST00000563220 MMRN1Q13201 1228 aa18.84■□□□□ 0.61
COMMD4-208ENST00000563220 NFE2Q16621 373 aaPredicted RBP18.84■□□□□ 0.61
COMMD4-208ENST00000563220 UBE2Q1Q7Z7E8 422 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms