RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 VCPP55072 806 aaKnown RBP13.48□□□□□ -0.25
SNX1-211ENST00000560829 MTMR3Q13615 1198 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 SLC25A52Q3SY17 297 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 HSP90B2PQ58FF3 399 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 SIX6OS1Q8N1H7 587 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 SCML4Q8N228 414 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 CCDC89Q8N998 374 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 OR10T2Q8NGX3 314 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 CCHCR1Q8TD31 782 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 CCDC114Q96M63 670 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 SH3GL2Q99962 352 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 ADAM33Q9BZ11 813 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 PNPLA8Q9NP80 782 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 F8W810 466 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 APOC4-APOC2K7ER74 178 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 PQBP1O60828 265 aaKnown RBP13.48□□□□□ -0.25
SNX1-211ENST00000560829 OAZ2O95190 189 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 APOC2P02655 101 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 TFE3P19532 575 aaPredicted RBP13.48□□□□□ -0.25
SNX1-211ENST00000560829 GGCXP38435 758 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 CDH6P55285 790 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 DAOAP59103 153 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 YWHAHQ04917 246 aaPredicted RBP13.48□□□□□ -0.25
SNX1-211ENST00000560829 CALCOCO2Q13137 446 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 TFDP2Q14188 446 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 DPYSL3Q14195 570 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 UAP1Q16222 522 aaPredicted RBP13.48□□□□□ -0.25
SNX1-211ENST00000560829 CFAP58Q5T655 872 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 RHBDF2Q6PJF5 856 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 SLC39A5Q6ZMH5 540 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 ZNF365Q70YC5 407 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 DEFB106AQ8N104 65 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 ALLCQ8N6M5 410 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 FAF2Q96CS3 445 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 SNF8Q96H20 258 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 ZIM3Q96PE6 472 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 KCNK16Q96T55 309 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 FAM118BQ9BPY3 351 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 ZNF670Q9BS34 389 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 SNRNP25Q9BV90 132 aaKnown RBP13.48□□□□□ -0.25
SNX1-211ENST00000560829 POPDC2Q9HBU9 364 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 MTRF1LQ9UGC7 380 aaKnown RBP13.48□□□□□ -0.25
SNX1-211ENST00000560829 ASIC3Q9UHC3 531 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 PCDHB7Q9Y5E2 793 aa13.48□□□□□ -0.25
SNX1-211ENST00000560829 HOXA2O43364 376 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 TRAPPC3O43617 180 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 MYCP01106 439 aaPredicted RBP13.47□□□□□ -0.25
SNX1-211ENST00000560829 IL4RP24394 825 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 HSD17B3P37058 310 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 NDUFV1P49821 464 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 TSPY1Q01534 308 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 CAV1Q03135 178 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 RNASELQ05823 741 aaKnown RBP13.47□□□□□ -0.25
SNX1-211ENST00000560829 DPYSL2Q16555 572 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 TCTN1Q2MV58 587 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 ERMARDQ5T6L9 678 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 OTUD1Q5VV17 481 aaPredicted RBP13.47□□□□□ -0.25
SNX1-211ENST00000560829 SCYL2Q6P3W7 929 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 LRIG3Q6UXM1 1119 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 LRRTM3Q86VH5 581 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 PSTKQ8IV42 348 aaKnown RBP13.47□□□□□ -0.25
SNX1-211ENST00000560829 BBOF1Q8ND07 529 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 ACTL9Q8TC94 416 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 FAM149B1Q96BN6 582 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 CASD1Q96PB1 797 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 FAM193BQ96PV7 902 aaPredicted RBP13.47□□□□□ -0.25
SNX1-211ENST00000560829 RNF157Q96PX1 679 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 NPY6RQ99463 290 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 CALN1Q9BXU9 219 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 ULBP1Q9BZM6 244 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 HIPK3Q9H422 1215 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 PCDH18Q9HCL0 1135 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 TMLHEQ9NVH6 421 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 TSC2P49815 1807 aa13.47□□□□□ -0.25
SNX1-211ENST00000560829 SYN3O14994 580 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 ATF2P15336 505 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 OR1G1P47890 313 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 OTUD4Q01804 1114 aaKnown RBP13.46□□□□□ -0.25
SNX1-211ENST00000560829 DHX9Q08211 1270 aaKnown RBP13.46□□□□□ -0.25
SNX1-211ENST00000560829 FAAP100Q0VG06 881 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 BHLHA9Q7RTU4 235 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 GPRIN1Q7Z2K8 1008 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 RFX6Q8HWS3 928 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 ABI1Q8IZP0 508 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 IRGQQ8WZA9 623 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 DMAP1Q9NPF5 467 aaPredicted RBP13.46□□□□□ -0.25
SNX1-211ENST00000560829 DNAJB4Q9UDY4 337 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 STAP1Q9ULZ2 295 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 ZNF148Q9UQR1 794 aa13.46□□□□□ -0.25
SNX1-211ENST00000560829 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.46□□□□□ -0.26
SNX1-211ENST00000560829 DCDC2CA8MYV0 355 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 NRP1O14786 923 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 OPA1O60313 960 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 KRT14P02533 472 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 FYNP06241 537 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 KRT81Q14533 505 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 CA9Q16790 459 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 ZC3H12AQ5D1E8 599 aaKnown RBP13.46□□□□□ -0.26
SNX1-211ENST00000560829 SLC9A4Q6AI14 798 aa13.46□□□□□ -0.26
SNX1-211ENST00000560829 PM20D1Q6GTS8 502 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms