RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 VWA8A3KMH1 1905 aa6.75□□□□□ -1.33
SPG11-221ENST00000560299 TSC2P49815 1807 aa6.75□□□□□ -1.33
SPG11-221ENST00000560299 NLRC5Q86WI3 1866 aa6.75□□□□□ -1.33
SPG11-221ENST00000560299 BRWD1Q9NSI6 2320 aa6.75□□□□□ -1.33
SPG11-221ENST00000560299 TCRBV5S1A1TA0A578 114 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 FAM170AA1A519 330 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 MTMR11A4FU01 709 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 F8VP50 259 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 TULP2O00295 520 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PRRG1O14668 218 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PAPSS1O43252 624 aaPredicted RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 LILRB3O75022 631 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 BEST1O76090 585 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 ARHGEF15O94989 841 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 CXCL14O95715 111 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 FTCDO95954 541 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 ZBED1O96006 694 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 F9P00740 461 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 ADH1AP07327 375 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 POU2F2P09086 479 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 OR4Q2P0C623 313 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 HAPLN1P10915 354 aaPredicted RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 ATF2P15336 505 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 HOXB8P17481 243 aaPredicted RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 GPD1P21695 349 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 COMTP21964 271 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PSMA2P25787 234 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 SDC4P31431 198 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 RFC1P35251 1148 aaPredicted RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 PAFAH1B1P43034 410 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 SSR1P43307 286 aaKnown RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 ALDH1A3P47895 512 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 VASPP50552 380 aaPredicted RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 ZNF143P52747 638 aaPredicted RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 RPL7AP62424 266 aaKnown RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 YWHAZP63104 245 aaKnown RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 ROR1Q01973 937 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 ADCY1Q08828 1119 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 ADIGQ0VDE8 80 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PLD1Q13393 1074 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 RAB33AQ14088 237 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 VEPH1Q14D04 833 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 TAF12Q16514 161 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 RAB41Q5JT25 222 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PPP1R15BQ5SWA1 713 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 ZFYVE27Q5T4F4 411 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PAPD7Q5XG87 772 aaKnown RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 ELMSAN1Q6PJG2 1045 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 OLFML1Q6UWY5 402 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 RNF19BQ6ZMZ0 732 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 DENND5BQ6ZUT9 1274 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 FAM183BPQ6ZVS7 135 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 SLC26A9Q7LBE3 791 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 NT5DC3Q86UY8 548 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 RHOT1Q8IXI2 618 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 MRPL43Q8N983 215 aaKnown RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 ATAD1Q8NBU5 361 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 MICAL1Q8TDZ2 1067 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 ARNTL2Q8WYA1 636 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PABPC5Q96DU9 382 aaKnown RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 PBKQ96KB5 322 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 SPATA17Q96L03 361 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PGLYRP2Q96PD5 576 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 KCNK16Q96T55 309 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 NAP1L3Q99457 506 aaPredicted RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 SEPT5Q99719 369 aaPredicted RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 CLSTN3Q9BQT9 956 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 CNPY3Q9BT09 278 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 ULBP1Q9BZM6 244 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 ZBP1Q9H171 429 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 POPDC2Q9HBU9 364 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 RXFP1Q9HBX9 757 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 RRAGDQ9NQL2 400 aaPredicted RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 ENTPD7Q9NQZ7 604 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 TLR9Q9NR96 1032 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 METTL5Q9NRN9 209 aaKnown RBP6.74□□□□□ -1.33
SPG11-221ENST00000560299 TMLHEQ9NVH6 421 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.74□□□□□ -1.33
SPG11-221ENST00000560299 STAP1Q9ULZ2 295 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 SNX12Q9UMY4 172 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 HYOU1Q9Y4L1 999 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PTPRDP23468 1912 aa6.74□□□□□ -1.33
SPG11-221ENST00000560299 PRUNE2Q8WUY3 3088 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 WDR27A2RRH5 827 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 C2CD4BA6NLJ0 364 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 HHLA1C9JL84 531 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 PIK3R2O00459 728 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CES2O00748 559 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 KCNK3O14649 394 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 ENC1O14682 589 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 PSTPIP1O43586 416 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 ABLIM3O94929 683 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 LTFP02788 710 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 ATP1A1P05023 1023 aaKnown RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 KRT7P08729 469 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 USP17L7P0C7H9 530 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CSH1P0DML2 217 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CSH2P0DML3 217 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 RALAP11233 206 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms