RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 LOC400499M0QZD8 3231 aa13.9□□□□□ -0.18
TPM1-220ENST00000559556 ADAMTS20P59510 1910 aa13.9□□□□□ -0.18
TPM1-220ENST00000559556 PVALEFA0A1B0GWK0 134 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 CDX4O14627 284 aaPredicted RBP13.89□□□□□ -0.19
TPM1-220ENST00000559556 GIPC1O14908 333 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 POLR2DO15514 142 aaKnown RBP13.89□□□□□ -0.19
TPM1-220ENST00000559556 HOXC11O43248 304 aaPredicted RBP13.89□□□□□ -0.19
TPM1-220ENST00000559556 ADAM23O75077 832 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 ZDHHC11BP0C7U3 371 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 CASP1P29466 404 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 DHPSP49366 369 aaPredicted RBP13.89□□□□□ -0.19
TPM1-220ENST00000559556 CASP4P49662 377 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 SLC5A3P53794 718 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 KNOP1Q1ED39 458 aaKnown RBP13.89□□□□□ -0.19
TPM1-220ENST00000559556 EOGTQ5NDL2 527 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 HECTD3Q5T447 861 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 PAQR9Q6ZVX9 377 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 SCAMP5Q8TAC9 235 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 PARD3BQ8TEW8 1205 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 TNIP3Q96KP6 325 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 KCNK16Q96T55 309 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 CCSER2Q9H7U1 834 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 FOXD4L1Q9NU39 408 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 CELSR3Q9NYQ7 3312 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 PLXNA2O75051 1894 aa13.89□□□□□ -0.19
TPM1-220ENST00000559556 LRRIQ3A6PVS8 624 aaPredicted RBP13.88□□□□□ -0.19
TPM1-220ENST00000559556 EXOC3O60645 756 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 PHACTR2O75167 634 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 CSRP1P21291 193 aaKnown RBP13.88□□□□□ -0.19
TPM1-220ENST00000559556 AP3M2P53677 418 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 CDH8P55286 799 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 IRX4P78413 519 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 GAD2Q05329 585 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 ZNF252P-AS1Q0IIN9 211 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 NCOA4Q13772 614 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 MAP7D1Q3KQU3 841 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 ZNF667Q5HYK9 610 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 SPDYCQ5MJ68 293 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 SH3PXD2AQ5TCZ1 1133 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 PEAR1Q5VY43 1037 aaPredicted RBP13.88□□□□□ -0.19
TPM1-220ENST00000559556 SCARA5Q6ZMJ2 495 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 LPCAT2Q7L5N7 544 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 TTC30AQ86WT1 665 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 FUKQ8N0W3 1084 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 TERB1Q8NA31 727 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 GOLGA5Q8TBA6 731 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 KCNV2Q8TDN2 545 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 TMEM174Q8WUU8 243 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 PIGKQ92643 395 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 MED10Q9BTT4 135 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 SDCBP2Q9H190 292 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 BLZF1Q9H2G9 400 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 SLC39A2Q9NP94 309 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 KRT82Q9NSB4 513 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 COMMD8Q9NX08 183 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 MBD1Q9UIS9 605 aaPredicted RBP13.88□□□□□ -0.19
TPM1-220ENST00000559556 WASF3Q9UPY6 502 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 MYLKQ15746 1914 aa13.88□□□□□ -0.19
TPM1-220ENST00000559556 TULP3O75386 442 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 AP1G2O75843 785 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 VNN1O95497 513 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 C4BPAP04003 597 aaKnown RBP13.87□□□□□ -0.19
TPM1-220ENST00000559556 PROS1P07225 676 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 CEACAM1P13688 526 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 HOXD12P35452 270 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 DPP6P42658 865 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 LMAN2Q12907 356 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 BIRC3Q13489 604 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 CUL4BQ13620 913 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 PREPLQ4J6C6 727 aaPredicted RBP13.87□□□□□ -0.19
TPM1-220ENST00000559556 EMC10Q5UCC4 262 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 RESP18Q5W5W9 173 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 TRMT11Q7Z4G4 463 aaKnown RBP13.87□□□□□ -0.19
TPM1-220ENST00000559556 SYT12Q8IV01 421 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 BBS7Q8IWZ6 715 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 ZNF513Q8N8E2 541 aaPredicted RBP13.87□□□□□ -0.19
TPM1-220ENST00000559556 ZMIZ2Q8NF64 920 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 HMGB4Q8WW32 186 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 RLN3Q8WXF3 142 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 CSNK1G1Q9HCP0 422 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 ZDHHC4Q9NPG8 344 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 SPHK2Q9NRA0 654 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 GMIPQ9P107 970 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 BCCIPQ9P287 314 aaKnown RBP eCLIP13.87□□□□□ -0.19
TPM1-220ENST00000559556 CHORDC1Q9UHD1 332 aaPredicted RBP13.87□□□□□ -0.19
TPM1-220ENST00000559556 SH3BP1Q9Y3L3 701 aa13.87□□□□□ -0.19
TPM1-220ENST00000559556 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 TCRBV21S2A2A0A5A6 115 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 KLRC4O43908 158 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 TLR5O60602 858 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 PTGER3P43115 390 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 BYSLQ13895 437 aaKnown RBP13.86□□□□□ -0.19
TPM1-220ENST00000559556 TRIM61Q5EBN2 209 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 BTBD8Q5XKL5 378 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 SLC23A3Q6PIS1 610 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 ACOT1Q86TX2 421 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 SLC9A9Q8IVB4 645 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 TMEFF1Q8IYR6 380 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 FRMD1Q8N878 549 aa13.86□□□□□ -0.19
TPM1-220ENST00000559556 WBP2Q969T9 261 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms