RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 ANKRD27Q96NW4 1050 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 INPP4AQ96PE3 977 aaPredicted RBP6.32□□□□□ -1.4
VPS33B-203ENST00000554264 TEX13BQ9BXU2 312 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 NSRP1Q9H0G5 558 aaKnown RBP6.32□□□□□ -1.4
VPS33B-203ENST00000554264 HIPK3Q9H422 1215 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 TMBIM4Q9HC24 238 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 CRTAC1Q9NQ79 661 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 CLEC1BQ9P126 229 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 FBLN5Q9UBX5 448 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 MAD2L2Q9UI95 211 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 COG5Q9UP83 839 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS33B-203ENST00000554264 SLC4A7Q9Y6M7 1214 aa6.32□□□□□ -1.4
VPS33B-203ENST00000554264 GMNCA6NCL1 334 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 MYADML2A6NDP7 307 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 SMCO2A6NFE2 343 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CFAP73A6NFT4 308 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CCDC169A6NNP5 214 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 KLRF2D3W0D1 207 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 ZNF263O14978 683 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CETN3O15182 167 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 ZNF185O15231 689 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 PDPK1O15530 556 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 GGPS1O95749 300 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 PFKMP08237 780 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 MYBL2P10244 700 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 EEF2P13639 858 aaKnown RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 AKR1B1P15121 316 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 EZRP15311 586 aaKnown RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 PNLIPP16233 465 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 ADCY7P51828 1080 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 DRG2P55039 364 aaKnown RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 NKX3-2P78367 333 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 GUCY2DQ02846 1103 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 TFF2Q03403 129 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 KLHL30Q0D2K2 578 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 TRAF1Q13077 416 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 ITIH4Q14624 930 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 ZCWPW2Q504Y3 356 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 TTMPQ5BVD1 217 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 FAM26FQ5R3K3 315 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 FAM83BQ5T0W9 1011 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 SNRNP48Q6IEG0 339 aaKnown RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 NFRKBQ6P4R8 1299 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CRELD2Q6UXH1 353 aaPredicted RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CYP2R1Q6VVX0 501 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 OTOP2Q7RTS6 562 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CCDC103Q8IW40 242 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CACNA2D3Q8IZS8 1091 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 KIAA0895Q8NCT3 520 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 NUP43Q8NFH3 380 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 REPS2Q8NFH8 660 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 MORC4Q8TE76 937 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 C1orf159Q96HA4 380 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 MTMR9Q96QG7 549 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CCT8L2Q96SF2 557 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CCDC113Q9H0I3 377 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 NSUN3Q9H649 340 aaKnown RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 EPHX3Q9H6B9 360 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 KANSL2Q9H9L4 492 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 EPB41L5Q9HCM4 733 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 FAM207AQ9NSI2 230 aaPredicted RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 RBM12Q9NTZ6 932 aaKnown RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 FBXO28Q9NVF7 368 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 SUCLA2Q9P2R7 463 aaPredicted RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 FBXO40Q9UH90 709 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 RASAL2Q9UJF2 1139 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 UTP11Q9Y3A2 253 aaKnown RBP6.31□□□□□ -1.4
VPS33B-203ENST00000554264 CAPN7Q9Y6W3 813 aa6.31□□□□□ -1.4
VPS33B-203ENST00000554264 PLXNA1Q9UIW2 1896 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 UBE4BO95155 1302 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 ZNF233A6NK53 670 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 ATP2A1O14983 1001 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 TBX3O15119 743 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 TRAPPC3O43617 180 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 CALUO43852 315 aaPredicted RBP6.3□□□□□ -1.4
VPS33B-203ENST00000554264 ZBED4O75132 1171 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 PALMO75781 387 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 DNAJC8O75937 253 aaPredicted RBP6.3□□□□□ -1.4
VPS33B-203ENST00000554264 SCG5P05408 212 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 FERP16591 822 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 ATP2A2P16615 1042 aaKnown RBP6.3□□□□□ -1.4
VPS33B-203ENST00000554264 ATP5DP30049 168 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 HOXC12P31275 282 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 CTNNA1P35221 906 aaKnown RBP6.3□□□□□ -1.4
VPS33B-203ENST00000554264 SLC1A4P43007 532 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 FNTAP49354 379 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 MRPL12P52815 198 aaKnown RBP6.3□□□□□ -1.4
VPS33B-203ENST00000554264 RABGGTBP53611 331 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 GFRA1P56159 465 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 PDCLQ13371 301 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 RIPK1Q13546 671 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 LAPTM5Q13571 262 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 ITGA7Q13683 1181 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 BYSLQ13895 437 aaKnown RBP6.3□□□□□ -1.4
VPS33B-203ENST00000554264 DHX34Q14147 1143 aaKnown RBP6.3□□□□□ -1.4
VPS33B-203ENST00000554264 SNCBQ16143 134 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 NFIL3Q16649 462 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 KIAA0753Q2KHM9 967 aa6.3□□□□□ -1.4
VPS33B-203ENST00000554264 LETM2Q2VYF4 491 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms