RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 PABPC3Q9H361 631 aaKnown RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 KIAA1586Q9HCI6 787 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 NOCTQ9UK39 431 aaKnown RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 AGO2Q9UKV8 859 aaKnown RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 PCDHGB3Q9Y5G1 929 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 ARPC4-TTLL3A0A0A6YYG9 625 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 K7ERI5 159 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 RASGRF2O14827 1237 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 C22orf31O95567 290 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 ITGBL1O95965 494 aaPredicted RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 FGGP02679 453 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 C4BPAP04003 597 aaKnown RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 UBTFL6P0CB48 400 aaPredicted RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 GSTT2P0CG29 244 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 GSTT2BP0CG30 244 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 ZCCHC18P0CG32 403 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 HOXD8P13378 290 aaPredicted RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 ETS2P15036 469 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 CREB1P16220 341 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 CHRNB2P17787 502 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 DDX5P17844 614 aaKnown RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 ETFBP38117 255 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 USP46P62068 366 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 CETN1Q12798 172 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 FAM110CQ1W6H9 321 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 P3H1Q32P28 736 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 WDR45BQ5MNZ6 344 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 C6orf118Q5T5N4 469 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 GRAMD4Q6IC98 578 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 LRRC71Q8N4P6 559 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 C2orf69Q8N8R5 385 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 FAM13CQ8NE31 585 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 PPTC7Q8NI37 304 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 PARK7Q99497 189 aaKnown RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 RNPEPQ9H4A4 650 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 SMARCAD1Q9H4L7 1026 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 DMAP1Q9NPF5 467 aaPredicted RBP8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 RAB20Q9NX57 234 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 TAS2R14Q9NYV8 317 aa8.33□□□□□ -1.08
PDLIM5-221ENST00000542407 TRPM7Q96QT4 1865 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 LRRC72A6NJI9 287 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ADCY6O43306 1168 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 UNC5CO95185 931 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 VNN1O95497 513 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 STAMBPO95630 424 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 LGALS2P05162 132 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ACADSP16219 412 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 CD9P21926 228 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 PROZP22891 400 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 CETN2P41208 172 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ACOT2P49753 483 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 DR1Q01658 176 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ZACNQ401N2 412 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 TDRD10Q5VZ19 366 aaKnown RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ZPBP2Q6X784 338 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ARHGEF18Q6ZSZ5 1173 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ACTRT1Q8TDG2 376 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 EPS8L1Q8TE68 723 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 U2AF1L4Q8WU68 220 aaKnown RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 DHX38Q92620 1227 aaKnown RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ELMO3Q96BJ8 720 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 PGM2Q96G03 612 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 AGPAT1Q99943 283 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 NDEL1Q9GZM8 345 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 NMRK1Q9NWW6 199 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 NR2E1Q9Y466 385 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 TMEM120BA0PK00 339 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 CCDC188H7C350 402 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 HBP1O60381 514 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 AGTP01019 485 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 DLATP10515 647 aaKnown RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 GZMAP12544 262 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 EPHB2P29323 1055 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ADCYAP1R1P41586 468 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 EFNA5P52803 228 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 GALCP54803 685 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 MCL1Q07820 350 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 LAMC2Q13753 1193 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 MXD4Q14582 209 aaPredicted RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 EGFLAMQ63HQ2 1017 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 TWF2Q6IBS0 349 aaKnown RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 SLFN12LQ6IEE8 588 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 SLFN11Q7Z7L1 901 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 NOP9Q86U38 636 aaKnown RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 RBBP8NLQ8NC74 664 aaPredicted RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 FBXO25Q8TCJ0 367 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 LRRC8CQ8TDW0 803 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 WDR60Q8WVS4 1066 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 IPCEF1Q8WWN9 437 aaPredicted RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 TGS1Q96RS0 853 aaKnown RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 PCDHB18PQ96TA0 734 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ACO2Q99798 780 aaKnown RBP8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 C16orf70Q9BSU1 422 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 TPK1Q9H3S4 243 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 PTPRHQ9HD43 1115 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 TXLNGQ9NUQ3 528 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 CLIC5Q9NZA1 410 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 PCDHB2Q9Y5E7 798 aa8.32□□□□□ -1.08
PDLIM5-221ENST00000542407 ZC3H11AO75152 810 aaKnown RBP eCLIP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms