RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 DMAP1Q9NPF5 467 aaPredicted RBP14.4□□□□□ -0.1
SS18-204ENST00000539244 BCCIPQ9P287 314 aaKnown RBP eCLIP14.4□□□□□ -0.1
SS18-204ENST00000539244 NXF1Q9UBU9 619 aaKnown RBP14.4□□□□□ -0.1
SS18-204ENST00000539244 PILRBQ9UKJ0 227 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 SH3BP1Q9Y3L3 701 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 CEP192Q8TEP8 1941 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 WDFY3Q8IZQ1 3526 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 ATP8B3O60423 1300 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 TCRBV21S2A2A0A5A6 115 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 TBC1D3BA6NDS4 549 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 TMEM8BA6NDV4 472 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 UPK3BL1B0FP48 263 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 UPK3BL2E5RIL1 263 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 MAP3K13O43283 966 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 TULP3O75386 442 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 YEATS4O95619 227 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 AP3M2P53677 418 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 LYSMD4Q5XG99 296 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 BTBD8Q5XKL5 378 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 SHC4Q6S5L8 630 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 NUDT18Q6ZVK8 323 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 BBS7Q8IWZ6 715 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 NELFCDQ8IXH7 590 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 ZNF513Q8N8E2 541 aaPredicted RBP14.39□□□□□ -0.11
SS18-204ENST00000539244 TERB1Q8NA31 727 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 DEFB124Q8NES8 71 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 SCAMP5Q8TAC9 235 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 TMEM174Q8WUU8 243 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 GATA6Q92908 595 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 SMARCD1Q96GM5 515 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 SMYD3Q9H7B4 428 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 CCSER2Q9H7U1 834 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 SPHK2Q9NRA0 654 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 DEC1Q9P2X7 70 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 CHORDC1Q9UHD1 332 aaPredicted RBP14.39□□□□□ -0.11
SS18-204ENST00000539244 HCN2Q9UL51 889 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 ZMIZ1Q9ULJ6 1067 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 STARD13Q9Y3M8 1113 aa14.39□□□□□ -0.11
SS18-204ENST00000539244 CACNA1EQ15878 2313 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 PCDH15Q96QU1 1955 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 ZZEF1O43149 2961 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 PVALEFA0A1B0GWK0 134 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 GREM1O60565 184 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 CUTAO60888 179 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 ENGP17813 658 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 CDH8P55286 799 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 SEMA3BQ13214 749 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 KNOP1Q1ED39 458 aaKnown RBP14.38□□□□□ -0.11
SS18-204ENST00000539244 ZNF699Q32M78 642 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 UAP1L1Q3KQV9 507 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 ZNF667Q5HYK9 610 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 ARMCX6Q7L4S7 300 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 PIP4P1Q86T03 277 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 TMEM25Q86YD3 366 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 FUKQ8N0W3 1084 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 ZMIZ2Q8NF64 920 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 CEP76Q8TAP6 659 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 PLEKHO2Q8TD55 490 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 PARD3BQ8TEW8 1205 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 SCNM1Q9BWG6 230 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 SLC32A1Q9H598 525 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 CSNK1G1Q9HCP0 422 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 CD248Q9HCU0 757 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 ZDHHC4Q9NPG8 344 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 GMIPQ9P107 970 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 TFIP11Q9UBB9 837 aaKnown RBP14.38□□□□□ -0.11
SS18-204ENST00000539244 IGF2RP11717 2491 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 SPEGQ15772 3267 aa14.38□□□□□ -0.11
SS18-204ENST00000539244 MYH10P35580 1976 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 AP5Z1O43299 807 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 EXOC3O60645 756 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 PHACTR2O75167 634 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 TOP3BO95985 862 aaKnown RBP14.37□□□□□ -0.11
SS18-204ENST00000539244 C4BPAP04003 597 aaKnown RBP14.37□□□□□ -0.11
SS18-204ENST00000539244 GABRG2P18507 467 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 SPINK2P20155 84 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 ITPKAP23677 461 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 NTSR1P30989 418 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 CASP4P49662 377 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 NCOA4Q13772 614 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 DUOXA1Q1HG43 343 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 SLC36A4Q6YBV0 504 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 HTR3DQ70Z44 454 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 RABEPKQ7Z6M1 372 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 PGBD3Q8N328 593 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 NAT16Q8N8M0 369 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 GOLGA5Q8TBA6 731 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 WBP2Q969T9 261 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 ZNF396Q96N95 335 aaPredicted RBP14.37□□□□□ -0.11
SS18-204ENST00000539244 SMOQ99835 787 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 MED10Q9BTT4 135 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 SDCBP2Q9H190 292 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 FBXO44Q9H4M3 255 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 CAPN10Q9HC96 672 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 KRT82Q9NSB4 513 aa14.37□□□□□ -0.11
SS18-204ENST00000539244 CIZ1Q9ULV3 898 aaPredicted RBP14.37□□□□□ -0.11
SS18-204ENST00000539244 A0A1W2PQF6 199 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 LRRIQ3A6PVS8 624 aaPredicted RBP14.36□□□□□ -0.11
SS18-204ENST00000539244 CACNG3O60359 315 aa14.36□□□□□ -0.11
SS18-204ENST00000539244 TLR5O60602 858 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms