RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 ARHGEF19Q8IW93 802 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 SYNPOQ8N3V7 929 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 KIAA1958Q8N8K9 716 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 KAT5Q92993 513 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 ZFRQ96KR1 1074 aaKnown RBP22.03■■□□□ 1.12
VPS28-203ENST00000524521 CNOT6LQ96LI5 555 aaKnown RBP22.03■■□□□ 1.12
VPS28-203ENST00000524521 GBP4Q96PP9 640 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 UBXN6Q9BZV1 441 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 NMUR1Q9HB89 426 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 PRMT8Q9NR22 394 aaPredicted RBP22.03■■□□□ 1.12
VPS28-203ENST00000524521 OSER1Q9NX31 292 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 HESX1Q9UBX0 185 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 TSPAN16Q9UKR8 245 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 KIAA1257Q9ULG3 409 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 SH3BP1Q9Y3L3 701 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 E2F8A0AVK6 867 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 PRR23AA6NEV1 266 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 IRF1P10914 325 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 RARGP13631 454 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 ATP5C1P36542 298 aaKnown RBP22.02■■□□□ 1.12
VPS28-203ENST00000524521 SATB1Q01826 763 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 PPP2R5DQ14738 602 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 CCDC186Q7Z3E2 898 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 PIGZQ86VD9 579 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 TTC30AQ86WT1 665 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 CD101Q93033 1021 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 INTS2Q9H0H0 1204 aaKnown RBP22.02■■□□□ 1.12
VPS28-203ENST00000524521 TBC1D14Q9P2M4 693 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 NAGPAQ9UK23 515 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 NUDT5Q9UKK9 219 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 USP3Q9Y6I4 520 aa22.02■■□□□ 1.12
VPS28-203ENST00000524521 ZFHX2Q9C0A1 2572 aaPredicted RBP22.01■■□□□ 1.11
VPS28-203ENST00000524521 RNF225M0QZC1 329 aaPredicted RBP22.01■■□□□ 1.11
VPS28-203ENST00000524521 EGFP01133 1207 aa22.01■■□□□ 1.11
VPS28-203ENST00000524521 DRD1P21728 446 aa22.01■■□□□ 1.11
VPS28-203ENST00000524521 PDE4CQ08493 712 aa22.01■■□□□ 1.11
VPS28-203ENST00000524521 SCD5Q86SK9 330 aa22.01■■□□□ 1.11
VPS28-203ENST00000524521 UBA3Q8TBC4 463 aa22.01■■□□□ 1.11
VPS28-203ENST00000524521 ATRIPQ8WXE1 791 aa22.01■■□□□ 1.11
VPS28-203ENST00000524521 IPO9Q96P70 1041 aaKnown RBP22.01■■□□□ 1.11
VPS28-203ENST00000524521 SEMA4AQ9H3S1 761 aa22.01■■□□□ 1.11
VPS28-203ENST00000524521 CYLDQ9NQC7 956 aa22.01■■□□□ 1.11
VPS28-203ENST00000524521 ZSCAN32Q9NX65 697 aa22.01■■□□□ 1.11
VPS28-203ENST00000524521 MYO16Q9Y6X6 1858 aa22■■□□□ 1.11
VPS28-203ENST00000524521 TULP2O00295 520 aa22■■□□□ 1.11
VPS28-203ENST00000524521 CYP17A1P05093 508 aa22■■□□□ 1.11
VPS28-203ENST00000524521 PAEPP09466 180 aa22■■□□□ 1.11
VPS28-203ENST00000524521 PSEN1P49768 467 aa22■■□□□ 1.11
VPS28-203ENST00000524521 BCAT1P54687 386 aa22■■□□□ 1.11
VPS28-203ENST00000524521 GCNT1Q02742 428 aa22■■□□□ 1.11
VPS28-203ENST00000524521 DHCR24Q15392 516 aa22■■□□□ 1.11
VPS28-203ENST00000524521 DPCR1Q3MIW9 517 aa22■■□□□ 1.11
VPS28-203ENST00000524521 C10orf120Q5SQS8 335 aa22■■□□□ 1.11
VPS28-203ENST00000524521 IRF2BP1Q8IU81 584 aa22■■□□□ 1.11
VPS28-203ENST00000524521 WBP2Q969T9 261 aa22■■□□□ 1.11
VPS28-203ENST00000524521 KLF16Q9BXK1 252 aaPredicted RBP22■■□□□ 1.11
VPS28-203ENST00000524521 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22■■□□□ 1.11
VPS28-203ENST00000524521 O00370 1275 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 XPO1O14980 1071 aaKnown RBP21.99■■□□□ 1.11
VPS28-203ENST00000524521 RALAP11233 206 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 MTIF2P46199 727 aaKnown RBP21.99■■□□□ 1.11
VPS28-203ENST00000524521 TKTL1P51854 596 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 NRLP54845 237 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 BST2Q10589 180 aaKnown RBP21.99■■□□□ 1.11
VPS28-203ENST00000524521 RAB41Q5JT25 222 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 RHBDF2Q6PJF5 856 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 RBBP8NLQ8NC74 664 aaPredicted RBP21.99■■□□□ 1.11
VPS28-203ENST00000524521 TFAP2BQ92481 460 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 OTUB2Q96DC9 234 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 CRACR2AQ9BSW2 395 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 FAM126AQ9BYI3 521 aaPredicted RBP21.99■■□□□ 1.11
VPS28-203ENST00000524521 LRRC4Q9HBW1 653 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 UBE2TQ9NPD8 197 aaPredicted RBP21.99■■□□□ 1.11
VPS28-203ENST00000524521 DACH1Q9UI36 760 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 DNMT3LQ9UJW3 386 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 PCDHGA2Q9Y5H1 932 aa21.99■■□□□ 1.11
VPS28-203ENST00000524521 GOLGA6L22H0YM25 854 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 MDM4O15151 490 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 CALCAP01258 141 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 LMNAP02545 664 aaKnown RBP21.98■■□□□ 1.11
VPS28-203ENST00000524521 LCLAT1Q6UWP7 414 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 TADA2BQ86TJ2 420 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 BBS7Q8IWZ6 715 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 ZBTB44Q8NCP5 570 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 NELL1Q92832 810 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 KREMEN1Q96MU8 473 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 C2orf42Q9NWW7 574 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 CLIC5Q9NZA1 410 aa21.98■■□□□ 1.11
VPS28-203ENST00000524521 ATG2BQ96BY7 2078 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 ATG13O75143 517 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 RNF40O75150 1001 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 ZBED1O96006 694 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 ADH1CP00326 375 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 TDGF1P13385 188 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 BRD2P25440 801 aaKnown RBP21.97■■□□□ 1.11
VPS28-203ENST00000524521 ERCC5P28715 1186 aaPredicted RBP21.97■■□□□ 1.11
VPS28-203ENST00000524521 OPRD1P41143 372 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 PLA2G4AP47712 749 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 GOLGA8FQ08AF8 430 aa21.97■■□□□ 1.11
VPS28-203ENST00000524521 GOLGA8DPQ0D2H9 430 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms