RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 ADRA1DP25100 572 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PSMC2P35998 433 aaKnown RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 NCKAP1LP55160 1127 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PPP3CAQ08209 521 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 ANGEL2Q5VTE6 544 aaKnown RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 KIAA1841Q6NSI8 718 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 C1orf186Q6ZWK4 172 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 TTC7BQ86TV6 843 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 GPBP1Q86WP2 473 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 LRRC49Q8IUZ0 686 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 FBXW8Q8N3Y1 598 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 ATP6V0A1Q93050 837 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 ARHGAP28Q9P2N2 729 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 CHORDC1Q9UHD1 332 aaPredicted RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 APPL1Q9UKG1 709 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 ZHX2Q9Y6X8 837 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 COL2A1P02458 1487 aaPredicted RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 SPDYE2BA6NHP3 402 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 GOLGA8RI6L899 631 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PPP1R11O60927 126 aaPredicted RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 MED24O75448 989 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 DGKIO75912 1065 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 FTLP02792 175 aaPredicted RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 SPDYE6P0CI01 402 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 KRT4P19013 534 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PMLP29590 882 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 ADSLP30566 484 aaPredicted RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PSMC1P62191 440 aaKnown RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 CTAG1AP78358 180 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 CDC20Q12834 499 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 CNGA3Q16281 694 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 INAQ16352 499 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 MOGQ16653 247 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 KLHL38Q2WGJ6 581 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 SPDYE2Q495Y8 402 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 AGAP7PQ5VUJ5 663 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 IZUMO3Q5VZ72 239 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 ACAD10Q6JQN1 1059 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 C15orf39Q6ZRI6 1047 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 MON1BQ7L1V2 547 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 MAVSQ7Z434 540 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 REXO1Q8N1G1 1221 aaKnown RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PQLC1Q8N2U9 271 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PDPRQ8NCN5 879 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 DLG3Q92796 817 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 TTC17Q96AE7 1141 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 PRPF18Q99633 342 aaKnown RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 CLSTN3Q9BQT9 956 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 NYXQ9GZU5 481 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 THG1LQ9NWX6 298 aaKnown RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 POMPQ9Y244 141 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 DTNAQ9Y4J8 743 aa8.7□□□□□ -1.02
CSMD1-213ENST00000523488 MYH9P35579 1960 aaKnown RBP8.7□□□□□ -1.02
CSMD1-213ENST00000523488 RSPH10B2B2RC85 870 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 ADCY6O43306 1168 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 SPAG6O75602 509 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 UGT2B4P06133 528 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 RSPH10BP0C881 870 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 CYP2C9P11712 490 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 ITGAXP20702 1163 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 EIF2B2P49770 351 aaKnown RBP8.69□□□□□ -1.02
CSMD1-213ENST00000523488 GPC3P51654 580 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 LSM12Q3MHD2 195 aaKnown RBP8.69□□□□□ -1.02
CSMD1-213ENST00000523488 ARL13BQ3SXY8 428 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 UBR7Q8N806 425 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 TMC2Q8TDI7 906 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 NDEL1Q9GZM8 345 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 MCM9Q9NXL9 1143 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 RRN3Q9NYV6 651 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 STK39Q9UEW8 545 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 ERGIC3Q9Y282 383 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 TRIM17Q9Y577 477 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 IKBKGQ9Y6K9 419 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 DLGAP1O14490 977 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 TDP2O95551 362 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 GSTT2P0CG29 244 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 GSTT2BP0CG30 244 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 CASP4P49662 377 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 NEK2P51955 445 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 PHKG1Q16816 387 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 ZBED5Q49AG3 693 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 PIGGQ5H8A4 983 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 NANOGP8Q6NSW7 305 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 LYSMD3Q7Z3D4 306 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 PCGF5Q86SE9 256 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 ZNF354CQ86Y25 554 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 ZNF564Q8TBZ8 553 aaPredicted RBP8.69□□□□□ -1.02
CSMD1-213ENST00000523488 TCP10LQ8TDR4 215 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 ATG4AQ8WYN0 398 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 TTC9Q92623 222 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 CNBD2Q96M20 576 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 UIMC1Q96RL1 719 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 GDF15Q99988 308 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 RTKNQ9BST9 563 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 MAN1C1Q9NR34 630 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 PLLPQ9Y342 182 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 SNAP23O00161 211 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 AQP9O43315 295 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 NDUFB5O43674 189 aa8.69□□□□□ -1.02
CSMD1-213ENST00000523488 LDHAP00338 332 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms