RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 HOXB2P14652 356 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 NTSR1P30989 418 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 SLC5A3P53794 718 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 DUOXA1Q1HG43 343 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 BMT2Q1RMZ1 405 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 C10orf76Q5T2E6 689 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 TMEM92Q6UXU6 159 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 CCDC150Q8NCX0 1101 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 GLIS3Q8NEA6 775 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 DPEP3Q9H4B8 488 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 EXOC1Q9NV70 894 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 CHORDC1Q9UHD1 332 aaPredicted RBP22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 CFAP45Q9UL16 551 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 FRMD4BQ9Y2L6 1034 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 CLDN5O00501 218 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 SYPP08247 313 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 BCKDHBP21953 392 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 ATP5C1P36542 298 aaKnown RBP22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 KIR2DL1P43626 348 aaPredicted RBP22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 SLC6A11P48066 632 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 ME1P48163 572 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 IRX4P78413 519 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 ZXDBP98169 803 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 RPL6Q02878 288 aaKnown RBP22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 SLC23A3Q6PIS1 610 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 UNC93AQ86WB7 457 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 TMEFF1Q8IYR6 380 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 TERB1Q8NA31 727 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 KRT82Q9NSB4 513 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 SUSD2Q9UGT4 822 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 SLC6A14Q9UN76 642 aa22.26■■□□□ 1.15
SQSTM1-210ENST00000506042 KMT2BQ9UMN6 2715 aaPredicted RBP22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 H0Y626 953 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 TLR5O60602 858 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 TULP3O75386 442 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 TRIM16O95361 564 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 HOXD13P35453 343 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 GAB4Q2WGN9 574 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 SYCP2LQ5T4T6 812 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 ARMCX6Q7L4S7 300 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 CHPFQ8IZ52 775 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 CDK5RAP1Q96SZ6 601 aaKnown RBP22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 ADAM33Q9BZ11 813 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 XYLT2Q9H1B5 865 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 SLC39A2Q9NP94 309 aa22.25■■□□□ 1.15
SQSTM1-210ENST00000506042 NDUFS2O75306 463 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 FAM200BP0CF97 657 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 GNSP15586 552 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 MAPK8P45983 427 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 PSEN1P49768 467 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 SCARA3Q6AZY7 606 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 SCARA5Q6ZMJ2 495 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 NAT16Q8N8M0 369 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 RLN3Q8WXF3 142 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 KCNK16Q96T55 309 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 BBS2Q9BXC9 721 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 FAM124BQ9H5Z6 455 aaPredicted RBP22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 SMYD3Q9H7B4 428 aa22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 DNAJC17Q9NVM6 304 aaKnown RBP22.24■■□□□ 1.15
SQSTM1-210ENST00000506042 PLXND1Q9Y4D7 1925 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 PATE3B3GLJ2 98 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 SCAMP3O14828 347 aaKnown RBP22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 OPHN1O60890 802 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 IRF1P10914 325 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 ENGP17813 658 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 ACOT1Q86TX2 421 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 PARD3BQ8TEW8 1205 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 CCSER2Q9H7U1 834 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 FOXD4L1Q9NU39 408 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 IL37Q9NZH6 218 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 GMIPQ9P107 970 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 ZNF510Q9Y2H8 683 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 STARD13Q9Y3M8 1113 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 PCDHA5Q9Y5H7 936 aa22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 CNOT1A5YKK6 2376 aaKnown RBP22.23■■□□□ 1.15
SQSTM1-210ENST00000506042 FAM92AA1XBS5 289 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 CDX4O14627 284 aaPredicted RBP22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 IKBKBO14920 756 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 NPC1O15118 1278 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 MYL1P05976 194 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 SERPINF2P08697 491 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 PIK3CAP42336 1068 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 AFMP43652 599 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 CACNA2D1P54289 1103 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 STARD3Q14849 445 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 MAP7D1Q3KQU3 841 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 HTR3DQ70Z44 454 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 C12orf40Q86WS4 652 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 SLC9A9Q8IVB4 645 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 BBS7Q8IWZ6 715 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 ETFBKMTQ8IXQ9 262 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 SCAMP5Q8TAC9 235 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 FOXJ1Q92949 421 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 GTPBP2Q9BX10 602 aaKnown RBP22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 PNPLA8Q9NP80 782 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 PILRBQ9UKJ0 227 aa22.22■■□□□ 1.15
SQSTM1-210ENST00000506042 UPK3BL1B0FP48 263 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 UPK3BL2E5RIL1 263 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 NEDD8-MDP1E9PL57 170 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms