RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ARHGAP39Q9C0H5 1083 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RPF1Q9H9Y2 349 aaKnown RBP16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RSAD1Q9HA92 442 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SLC5A4Q9NY91 659 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TNFSF13BQ9Y275 285 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TEX264Q9Y6I9 313 aa16.77■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 LACTBL1A8MY62 500 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PEX11AO75192 247 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 RNF8O76064 485 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 IL18RAPO95256 599 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 GM2AP17900 193 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PCK1P35558 622 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ETV4P43268 484 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 NEK3P51956 506 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CLNS1AP54105 237 aaKnown RBP16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 OVGP1Q12889 678 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 KCNJ11Q14654 390 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CELF3Q5SZQ8 465 aaKnown RBP16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 MTDHQ86UE4 582 aaKnown RBP16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 LONP2Q86WA8 852 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TMEM176AQ96HP8 235 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CYTH2Q99418 400 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 MANSC1Q9H8J5 431 aa16.77■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TCRBV9S1A1TA0A576 114 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 C1QAP02745 245 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ITGB3P05106 788 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ATP2A2P16615 1042 aaKnown RBP16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ZNF143P52747 638 aaPredicted RBP16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SLC18A2Q05940 514 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 NOGQ13253 232 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 JADE1Q6IE81 842 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 EXOC8Q8IYI6 725 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SLC44A1Q8WWI5 657 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TLE6Q9H808 572 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ALG13Q9NP73 1137 aaKnown RBP16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ASNSD1Q9NWL6 643 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ZFP69BQ9UJL9 534 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 KBTBD13C9JR72 458 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 M0QYV0 167 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 GNAZP19086 355 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CYP3A5P20815 502 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 EPHB2P29323 1055 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 STIP1P31948 543 aaKnown RBP16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CLCN3P51790 818 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SLC8A3P57103 927 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ROR1Q01973 937 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FAAP100Q0VG06 881 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CBLBQ13191 982 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 KBTBD12Q3ZCT8 623 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FYB2Q5VWT5 728 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 DARS2Q6PI48 645 aaKnown RBP16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CLNKQ7Z7G1 428 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ZC3H18Q86VM9 953 aaKnown RBP16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 KIRREL3Q8IZU9 778 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ARMC2Q8NEN0 867 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 UBA3Q8TBC4 463 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ADPGKQ9BRR6 497 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 USP29Q9HBJ7 922 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SAR1AQ9NR31 198 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 DCTN4Q9UJW0 460 aa16.76■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 MT-ND3P03897 115 aa16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CTGFP29279 349 aa16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CDH6P55285 790 aa16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PTK7Q13308 1070 aa16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SEPT7Q16181 437 aaKnown RBP16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SYCP2LQ5T4T6 812 aa16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 FAM102AQ5T9C2 384 aaPredicted RBP16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 EFCAB12Q6NXP0 572 aa16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 LRRC6Q86X45 466 aa16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PIWIL1Q96J94 861 aaKnown RBP16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 KCNK13Q9HB14 408 aa16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 LNPEPQ9UIQ6 1025 aa16.75■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 C2CD4BA6NLJ0 364 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 LPXNO60711 386 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 AVILO75366 819 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 STAG3L1P0CL83 205 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TROVE2P10155 538 aaKnown RBP eCLIP16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 GPD1P21695 349 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PTPN4P29074 926 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ZNF200P98182 395 aaPredicted RBP16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 TMEM132AQ24JP5 1023 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 C15orf59Q2T9L4 293 aaPredicted RBP16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ANKRD20A2Q5SQ80 823 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ANKRD20A1Q5TYW2 823 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ANKRD20A3Q5VUR7 823 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PRPF39Q86UA1 669 aaKnown RBP16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 ZNF483Q8TF39 744 aaPredicted RBP16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 RXFP2Q8WXD0 754 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 PARK7Q99497 189 aaKnown RBP16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 VRTNQ9H8Y1 702 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 RNPEPL1Q9HAU8 725 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 SLC24A3Q9HC58 644 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 IQANK1A0A1B0GTG1 560 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 NOP56O00567 594 aaKnown RBP16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 HMGCRP04035 888 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 VDRP11473 427 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 IL4RP24394 825 aa16.74■□□□□ 0.27
MSH5-SAPCD1-208ENST00000498473 CHSY1Q86X52 802 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms