RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CISHQ9NSE2 258 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 SCML2Q9UQR0 700 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 E2F8A0AVK6 867 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 GOLGA6L4A6NEF3 574 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 FKBP3Q00688 224 aaKnown RBP14.9□□□□□ -0.02
UPF3A-204ENST00000475218 SIM2Q14190 667 aaPredicted RBP14.9□□□□□ -0.02
UPF3A-204ENST00000475218 LAIR1Q6GTX8 287 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 PRR23BQ6ZRT6 265 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 BBS7Q8IWZ6 715 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 ELOA2Q8IYF1 753 aaPredicted RBP14.9□□□□□ -0.02
UPF3A-204ENST00000475218 USP33Q8TEY7 942 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 P2RY11Q96G91 374 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 FAXDC2Q96IV6 333 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 HHIPQ96QV1 700 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 CYLDQ9NQC7 956 aa14.9□□□□□ -0.02
UPF3A-204ENST00000475218 TLR5O60602 858 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 SMC2O95347 1197 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 CNR2P34972 360 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 KIF11P52732 1056 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 NR1H3Q13133 447 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 LY6G5CQ5SRR4 150 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 TTI2Q6NXR4 508 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 SYT13Q7L8C5 426 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 DDX42Q86XP3 938 aaKnown RBP eCLIP14.89□□□□□ -0.03
UPF3A-204ENST00000475218 UBR7Q8N806 425 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 CCDC34Q96HJ3 373 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 KLF16Q9BXK1 252 aaPredicted RBP14.89□□□□□ -0.03
UPF3A-204ENST00000475218 DUSP16Q9BY84 665 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 FBXO44Q9H4M3 255 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 PNPLA8Q9NP80 782 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 DLL3Q9NYJ7 618 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 USP3Q9Y6I4 520 aa14.89□□□□□ -0.03
UPF3A-204ENST00000475218 CCDC163A0A0D9SF12 145 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 A0A1W2PQH9 124 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 PPP1R3GB7ZBB8 358 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 MDM4O15151 490 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 ATG13O75143 517 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 HNRNPLP14866 589 aaKnown RBP eCLIP14.88□□□□□ -0.03
UPF3A-204ENST00000475218 ACO1P21399 889 aaKnown RBP14.88□□□□□ -0.03
UPF3A-204ENST00000475218 LRRC63Q05C16 580 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 DCAF17Q5H9S7 520 aaPredicted RBP14.88□□□□□ -0.03
UPF3A-204ENST00000475218 ETFBKMTQ8IXQ9 262 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 FAM160A2Q8N612 972 aaPredicted RBP14.88□□□□□ -0.03
UPF3A-204ENST00000475218 NUDT5Q9UKK9 219 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 SPAG17Q6Q759 2223 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 SLC9A3R1O14745 358 aaPredicted RBP14.88□□□□□ -0.03
UPF3A-204ENST00000475218 IRF1P10914 325 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 SEC13P55735 322 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 SPEM2Q0P670 501 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 DMC1Q14565 340 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 TCERG1LQ5VWI1 586 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 ARHGAP17Q68EM7 881 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 TTC30AQ86WT1 665 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 TMEM25Q86YD3 366 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 GAB3Q8WWW8 586 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 TMEM176AQ96HP8 235 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 TLR8Q9NR97 1041 aaKnown RBP14.88□□□□□ -0.03
UPF3A-204ENST00000475218 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.88□□□□□ -0.03
UPF3A-204ENST00000475218 HCN2Q9UL51 889 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 SLC8A2Q9UPR5 921 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 SDK1Q7Z5N4 2213 aa14.88□□□□□ -0.03
UPF3A-204ENST00000475218 A0A0A0MRY4 1105 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 TULP2O00295 520 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 TRIM24O15164 1050 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 STX10O60499 249 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 RETP07949 1114 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 ADH5P11766 374 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 EIF2DP41214 584 aaKnown RBP14.87□□□□□ -0.03
UPF3A-204ENST00000475218 MORC3Q14149 939 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 C2orf27AQ580R0 203 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 EMC10Q5UCC4 262 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 BHLHA9Q7RTU4 235 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 CCDC186Q7Z3E2 898 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 KBTBD6Q86V97 674 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 CAMKK1Q8N5S9 505 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 DHTKD1Q96HY7 919 aaPredicted RBP14.87□□□□□ -0.03
UPF3A-204ENST00000475218 HEXIM2Q96MH2 286 aaKnown RBP14.87□□□□□ -0.03
UPF3A-204ENST00000475218 TSG101Q99816 390 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 TBC1D14Q9P2M4 693 aa14.87□□□□□ -0.03
UPF3A-204ENST00000475218 ARMCX3Q9UH62 379 aaPredicted RBP14.87□□□□□ -0.03
UPF3A-204ENST00000475218 HOXC11O43248 304 aaPredicted RBP14.86□□□□□ -0.03
UPF3A-204ENST00000475218 KIR2DL1P43626 348 aaPredicted RBP14.86□□□□□ -0.03
UPF3A-204ENST00000475218 CUL2Q13617 745 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 RSPO4Q2I0M5 234 aaPredicted RBP14.86□□□□□ -0.03
UPF3A-204ENST00000475218 RAB41Q5JT25 222 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 TMEM92Q6UXU6 159 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 HTR3DQ70Z44 454 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 CCDC150Q8NCX0 1101 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 LMO3Q8TAP4 145 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 OTUB2Q96DC9 234 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 PNKPQ96T60 521 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 ZDHHC4Q9NPG8 344 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 GMEB2Q9UKD1 530 aa14.86□□□□□ -0.03
UPF3A-204ENST00000475218 RPP40O75818 363 aaKnown RBP14.85□□□□□ -0.03
UPF3A-204ENST00000475218 KAT7O95251 611 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 ADH1CP00326 375 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 RARGP13631 454 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 FMO5P49326 533 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 KDSRQ06136 332 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 KLHDC10Q6PID8 442 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms