RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 WRAP73Q9P2S5 460 aaPredicted RBP10.01□□□□□ -0.81
HDAC3-205ENST00000469550 DNAJB4Q9UDY4 337 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 SHOC2Q9UQ13 582 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 NOD1Q9Y239 953 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 MTCH2Q9Y6C9 303 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 SIP14410 1827 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 SPTBN5Q9NRC6 3674 aaKnown RBP10.01□□□□□ -0.81
HDAC3-205ENST00000469550 LIASO43766 372 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 MAGEC1O60732 1142 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 ZC3H11AO75152 810 aaKnown RBP eCLIP10.01□□□□□ -0.814e-10■■■■□ 22.8
HDAC3-205ENST00000469550 NR3C2P08235 984 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 FGFR1P11362 822 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 PLS3P13797 630 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 GEMIN4P57678 1058 aaKnown RBP10.01□□□□□ -0.81
HDAC3-205ENST00000469550 GCNT1Q02742 428 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 MAPK6Q16659 721 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 AAK1Q2M2I8 961 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 TRIM71Q2Q1W2 868 aaKnown RBP10.01□□□□□ -0.81
HDAC3-205ENST00000469550 CNKSR3Q6P9H4 555 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 PADI6Q6TGC4 694 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 LRRC8DQ7L1W4 858 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 GSTA5Q7RTV2 222 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 VPS52Q8N1B4 723 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 TMC2Q8TDI7 906 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 STMN2Q93045 179 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 AZIN2Q96A70 460 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 VCPIP1Q96JH7 1222 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 ZNF184Q99676 751 aaPredicted RBP10.01□□□□□ -0.81
HDAC3-205ENST00000469550 PDCD2LQ9BRP1 358 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 MAK16Q9BXY0 300 aaKnown RBP10.01□□□□□ -0.81
HDAC3-205ENST00000469550 ARL8BQ9NVJ2 186 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 POLIQ9UNA4 740 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 COL4A6Q14031 1691 aa10.01□□□□□ -0.81
HDAC3-205ENST00000469550 A0A1W2PPM1 405 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 CHMP2AO43633 222 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 EFCAB14O75071 495 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 KRT36O76013 467 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 TSHRP16473 764 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 HOXA13P31271 388 aaPredicted RBP10□□□□□ -0.81
HDAC3-205ENST00000469550 SSR1P43307 286 aaKnown RBP10□□□□□ -0.81
HDAC3-205ENST00000469550 PSEN2P49810 448 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 ARFIP2P53365 341 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 SH3BGRP55822 239 aaPredicted RBP10□□□□□ -0.81
HDAC3-205ENST00000469550 BPIFB4P59827 614 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 WDR5P61964 334 aaKnown RBP10□□□□□ -0.81
HDAC3-205ENST00000469550 CDK16Q00536 496 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 PTK7Q13308 1070 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 CCDC85BQ15834 202 aaPredicted RBP10□□□□□ -0.81
HDAC3-205ENST00000469550 CEP55Q53EZ4 464 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 ARHGEF16Q5VV41 709 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 FOXB2Q5VYV0 432 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 PPP1R2P3Q6NXS1 205 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 TRAF7Q6Q0C0 670 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 ADGRD1Q6QNK2 874 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 ZC3H18Q86VM9 953 aaKnown RBP10□□□□□ -0.81
HDAC3-205ENST00000469550 CHSY1Q86X52 802 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 ALLCQ8N6M5 410 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 FBXL13Q8NEE6 735 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 MCUR1Q96AQ8 359 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 FAM210AQ96ND0 272 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 GBP5Q96PP8 586 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 UHRF1Q96T88 793 aaPredicted RBP10□□□□□ -0.81
HDAC3-205ENST00000469550 RIT2Q99578 217 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 LXNQ9BS40 222 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 HEMGNQ9BXL5 484 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 MANSC1Q9H8J5 431 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 EHMT1Q9H9B1 1298 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 MRPL47Q9HD33 250 aaKnown RBP10□□□□□ -0.81
HDAC3-205ENST00000469550 RAB20Q9NX57 234 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 TAS2R1Q9NYW7 299 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 HEY2Q9UBP5 337 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 ANGPTL2Q9UKU9 493 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 NUMBLQ9Y6R0 609 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 MYH11P35749 1972 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 MICAL3Q7RTP6 2002 aa10□□□□□ -0.81
HDAC3-205ENST00000469550 ABHD14A-ACY1A0A1B0GW23 586 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 CFAP69A5D8W1 941 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 EPOPA6NHQ4 379 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 ARHGEF15O94989 841 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 CYP1A1P04798 512 aaPredicted RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 BMP1P13497 986 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 KRT4P19013 534 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 EIF2AK2P19525 551 aaKnown RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 PHBP35232 272 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 MCL1Q07820 350 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 LAMB3Q13751 1172 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 MFSD10Q14728 455 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 SEPT7Q16181 437 aaKnown RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 RNASEH2BQ5TBB1 312 aaKnown RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 LIN9Q5TKA1 542 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 TRIM72Q6ZMU5 477 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 PCGF5Q86SE9 256 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 USP37Q86T82 979 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 RCOR2Q8IZ40 523 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 BANPQ8N9N5 519 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 RFWD2Q8NHY2 731 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 MZB1Q8WU39 189 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 PPP1R13LQ8WUF5 828 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 TEKT3Q9BXF9 490 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 UNC45AQ9H3U1 944 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms