RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 GANQ9H2C0 597 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 C8orf33Q9H7E9 229 aaPredicted RBP12.48□□□□□ -0.41
VPS52-213ENST00000461743 LRRC4Q9HBW1 653 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 PCDHGC3Q9UN70 934 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 CCL26Q9Y258 94 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 SIK3Q9Y2K2 1263 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 FHOD1Q9Y613 1164 aa12.48□□□□□ -0.41
VPS52-213ENST00000461743 KRBA1A5PL33 1030 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 F8VZ95 297 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 MAN2B1O00754 1011 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 SLC9A3R1O14745 358 aaPredicted RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 COCHO43405 550 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 THAP12O43422 761 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 ZBED1O96006 694 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 ABL1P00519 1130 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 MBL2P11226 248 aaPredicted RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 RALAP11233 206 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 AOC1P19801 751 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 MAGEA9P43362 315 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 ACADSBP45954 432 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 RPL34P49207 117 aaKnown RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 TKTL1P51854 596 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 UBXN1Q04323 297 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 ADIGQ0VDE8 80 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 RAPGEF1Q13905 1077 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 FILIP1LQ4L180 1135 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 SLC44A4Q53GD3 710 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 CWF19L1Q69YN2 538 aaKnown RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 ASTLQ6HA08 431 aaPredicted RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 FMNL3Q8IVF7 1028 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 SH3RF2Q8TEC5 729 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 SLC35F5Q8WV83 523 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 OSCP1Q8WVF1 389 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 ZNF606Q8WXB4 792 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 IRGQQ8WZA9 623 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 SECISBP2LQ93073 1101 aaKnown RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 ATP2A3Q93084 1043 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 OTUB2Q96DC9 234 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 PRRX2Q99811 253 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 FAM83CQ9BQN1 747 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 ZSWIM1Q9BR11 485 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 TRIM62Q9BVG3 475 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 STK33Q9BYT3 514 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 NACA2Q9H009 215 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 SMG9Q9H0W8 520 aaKnown RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 TBC1D17Q9HA65 648 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 OLA1Q9NTK5 396 aaKnown RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.47□□□□□ -0.41
VPS52-213ENST00000461743 AJAP1Q9UKB5 411 aaPredicted RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 CA14Q9ULX7 337 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 MRPS17Q9Y2R5 130 aaKnown RBP12.47□□□□□ -0.41
VPS52-213ENST00000461743 CEP83Q9Y592 693 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 CPQQ9Y646 472 aa12.47□□□□□ -0.41
VPS52-213ENST00000461743 WDFY4Q6ZS81 3184 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 CACNA1HO95180 2353 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 A0A1W2PQH9 124 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 E2F8A0AVK6 867 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 LEFTY2O00292 366 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 NFATC1O95644 943 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 ATP1A3P13637 1013 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 ATP5C1P36542 298 aaKnown RBP12.46□□□□□ -0.41
VPS52-213ENST00000461743 USP8P40818 1118 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 GPD2P43304 727 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 IFNAR2P48551 515 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 JAM2P57087 298 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 APBA1Q02410 837 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 DRAP1Q14919 205 aaPredicted RBP12.46□□□□□ -0.41
VPS52-213ENST00000461743 SYCP1Q15431 976 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 ITPRIPL2Q3MIP1 535 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 ZNF852Q6ZMS4 543 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 TPRG1Q6ZUI0 275 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 RALGPS2Q86X27 583 aaPredicted RBP12.46□□□□□ -0.41
VPS52-213ENST00000461743 CPA6Q8N4T0 437 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 ST13P5Q8NFI4 369 aaPredicted RBP12.46□□□□□ -0.41
VPS52-213ENST00000461743 PJA1Q8NG27 643 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 NEK11Q8NG66 645 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 EXOC4Q96A65 974 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 ZFRQ96KR1 1074 aaKnown RBP12.46□□□□□ -0.41
VPS52-213ENST00000461743 LRRC3BQ96PB8 259 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 NOX5Q96PH1 765 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 CYP2S1Q96SQ9 504 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 NELL2Q99435 816 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 ULBP1Q9BZM6 244 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 RNF38Q9H0F5 515 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 LHX5Q9H2C1 402 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 CCSER2Q9H7U1 834 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 CHORDC1Q9UHD1 332 aaPredicted RBP12.46□□□□□ -0.41
VPS52-213ENST00000461743 NAGPAQ9UK23 515 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 PIAS3Q9Y6X2 628 aa12.46□□□□□ -0.41
VPS52-213ENST00000461743 A0A1B0GTH6 734 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 A0A1W2PQC6 194 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 KANSL1LA0AUZ9 987 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 GOLGA6L19H0YKK7 550 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 TULP2O00295 520 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 RARGP13631 454 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 CLCN1P35523 988 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 SNX16P57768 344 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 DAOAP59103 153 aa12.45□□□□□ -0.42
VPS52-213ENST00000461743 YWHAGP61981 247 aaKnown RBP eCLIP12.45□□□□□ -0.42
VPS52-213ENST00000461743 AMPD2Q01433 879 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms