RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 A0A0B4J269 797 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 SDR42E2A6NKP2 422 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 ATP9BO43861 1147 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 TFPTP0C1Z6 253 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 CSH1P0DML2 217 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 CSH2P0DML3 217 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 ALDH1A3P47895 512 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 EMP3P54852 163 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 MYBPC1Q00872 1141 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 GCNT1Q02742 428 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 RAB6CQ53S08 254 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 WDR44Q5JSH3 913 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 C1QTNF12Q5T7M4 302 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 PRR5LQ6MZQ0 368 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 LRRC8BQ6P9F7 803 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 KYAT3Q6YP21 454 aaKnown RBP12.16□□□□□ -0.46
CPSF3-202ENST00000460593 TSHZ1Q6ZSZ6 1077 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 MAVSQ7Z434 540 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 TRIM42Q8IWZ5 723 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 KIAA0319LQ8IZA0 1049 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 HSPH1Q92598 858 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 RAB6CQ9H0N0 254 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 XAB2Q9HCS7 855 aaKnown RBP12.16□□□□□ -0.46
CPSF3-202ENST00000460593 COL20A1Q9P218 1284 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 PIK3R2O00459 728 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 DNAJA2O60884 412 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 RFPL1O75677 317 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 VNN1O95497 513 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 SERPINA6P08185 405 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 RPL5P46777 297 aaKnown RBP12.16□□□□□ -0.46
CPSF3-202ENST00000460593 COPAP53621 1224 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 NLRP11P59045 1033 aaKnown RBP12.16□□□□□ -0.46
CPSF3-202ENST00000460593 STX3Q13277 289 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 SNAPC2Q13487 334 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 CYTH1Q15438 398 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 DRICH1Q6PGQ1 229 aaPredicted RBP12.16□□□□□ -0.46
CPSF3-202ENST00000460593 RFX6Q8HWS3 928 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 JOSD2Q8TAC2 188 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 ERLEC1Q96DZ1 483 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 ZBTB45Q96K62 511 aaPredicted RBP12.16□□□□□ -0.46
CPSF3-202ENST00000460593 CCDC17Q96LX7 622 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 C7orf26Q96N11 449 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 KMT5AQ9NQR1 393 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 HOMER2Q9NSB8 354 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 PIH1D1Q9NWS0 290 aaKnown RBP12.16□□□□□ -0.46
CPSF3-202ENST00000460593 NUB1Q9Y5A7 615 aa12.16□□□□□ -0.46
CPSF3-202ENST00000460593 SIN3BO75182 1162 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 RPS6KA4O75676 772 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 CRTAMO95727 393 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 P4HBP07237 508 aaKnown RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 ITGAXP20702 1163 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 STT3AP46977 705 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 EIF3EP60228 445 aaKnown RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 MRPS22P82650 360 aaKnown RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 ORC1Q13415 861 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 TUBB3Q13509 450 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 DPYSL3Q14195 570 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 B3GNT9Q6UX72 402 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 CPNE9Q8IYJ1 553 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 ARFGAP1Q8N6T3 406 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 TFB1MQ8WVM0 346 aaKnown RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 ZNF512Q96ME7 567 aaPredicted RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 CALN1Q9BXU9 219 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 SENP6Q9GZR1 1112 aaPredicted RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 MAD1L1Q9Y6D9 718 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 SF3B1O75533 1304 aaKnown RBP eCLIP12.15□□□□□ -0.462e-6■■■■■ 135.8
CPSF3-202ENST00000460593 C3orf70A6NLC5 250 aaPredicted RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 E7ESA3 106 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 RBP3P10745 1247 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 RPL10P27635 214 aaKnown RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 RFC1P35251 1148 aaPredicted RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 MAGEA8P43361 318 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 CDKL1Q00532 357 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 FAM91A1Q658Y4 838 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 ATG16L1Q676U5 607 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 KLHL35Q6PF15 583 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 TMEM130Q8N3G9 435 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 ZNF606Q8WXB4 792 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 MFSD14AQ96MC6 490 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 CCDC28BQ9BUN5 200 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 OXCT2Q9BYC2 517 aaPredicted RBP12.15□□□□□ -0.46
CPSF3-202ENST00000460593 PLAC1Q9HBJ0 212 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 FAM198AQ9UFP1 575 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 POLIQ9UNA4 740 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 TTLL3Q9Y4R7 772 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 SCINQ9Y6U3 715 aa12.15□□□□□ -0.46
CPSF3-202ENST00000460593 NFASCO94856 1347 aa12.15□□□□□ -0.47
CPSF3-202ENST00000460593 ZNF541Q9H0D2 1346 aa12.15□□□□□ -0.47
CPSF3-202ENST00000460593 CNTNAP2Q9UHC6 1331 aa12.15□□□□□ -0.47
CPSF3-202ENST00000460593 DCXO43602 365 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 DKC1O60832 514 aaKnown RBP eCLIP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 DGKIO75912 1065 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 SRGAP2CP0DJJ0 459 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 SRGAP2BP0DMP2 458 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 ARRB2P32121 409 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 QARSP47897 775 aaKnown RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 CUL2Q13617 745 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 CNGA3Q16281 694 aa12.14□□□□□ -0.47
CPSF3-202ENST00000460593 TTC39BQ5VTQ0 682 aaPredicted RBP12.14□□□□□ -0.47
CPSF3-202ENST00000460593 SCARA5Q6ZMJ2 495 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms