RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 PALMO75781 387 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 MTA2O94776 668 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 TCF4P15884 667 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 EPCAMP16422 314 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 KLRC2P26717 231 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 CLCN4P51793 760 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 GSCP56915 257 aaPredicted RBP11.54□□□□□ -0.56
SCN9A-205ENST00000454569 DAOAP59103 153 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 MRPS5P82675 430 aaKnown RBP11.54□□□□□ -0.56
SCN9A-205ENST00000454569 UBE3AQ05086 875 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 SMC1AQ14683 1233 aaKnown RBP11.54□□□□□ -0.56
SCN9A-205ENST00000454569 FAM102AQ5T9C2 384 aaPredicted RBP11.54□□□□□ -0.56
SCN9A-205ENST00000454569 LIN9Q5TKA1 542 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 VSTM1Q6UX27 236 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 SCD5Q86SK9 330 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 RBM23Q86U06 439 aaKnown RBP11.54□□□□□ -0.56
SCN9A-205ENST00000454569 GPR65Q8IYL9 337 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 ARFGAP1Q8N6T3 406 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 LRRC57Q8N9N7 239 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 TIFAQ96CG3 184 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 SAMD11Q96NU1 681 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 OXCT2Q9BYC2 517 aaPredicted RBP11.54□□□□□ -0.56
SCN9A-205ENST00000454569 NMUR1Q9HB89 426 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 LRRC4Q9HBW1 653 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 ABCB6Q9NP58 842 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.54□□□□□ -0.56
SCN9A-205ENST00000454569 OSER1Q9NX31 292 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 CALCOCO1Q9P1Z2 691 aa11.54□□□□□ -0.56
SCN9A-205ENST00000454569 PACSIN2Q9UNF0 486 aaPredicted RBP11.54□□□□□ -0.56
SCN9A-205ENST00000454569 SLC38A8A6NNN8 435 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 SOX1O00570 391 aaPredicted RBP11.53□□□□□ -0.56
SCN9A-205ENST00000454569 FTCDO95954 541 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 MYBL1P10243 752 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 KRT3P12035 628 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 HADHBP55084 474 aaKnown RBP11.53□□□□□ -0.56
SCN9A-205ENST00000454569 NAP1L1P55209 391 aaKnown RBP11.53□□□□□ -0.56
SCN9A-205ENST00000454569 GNG11P61952 73 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 SMAD3P84022 425 aaKnown RBP11.53□□□□□ -0.56
SCN9A-205ENST00000454569 MESDQ14696 234 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 SYPL2Q5VXT5 272 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 TPGS2Q68CL5 300 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 PM20D1Q6GTS8 502 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 DNAJC24Q6P3W2 148 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 SYT10Q6XYQ8 523 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 TCEAL8Q8IYN2 117 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 IPO4Q8TEX9 1081 aaKnown RBP11.53□□□□□ -0.56
SCN9A-205ENST00000454569 NOX5Q96PH1 765 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 SELENOOQ9BVL4 669 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 LUC7LQ9NQ29 371 aaKnown RBP11.53□□□□□ -0.56
SCN9A-205ENST00000454569 CYLDQ9NQC7 956 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 PARVAQ9NVD7 372 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 IL37Q9NZH6 218 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 ANAPC7Q9UJX3 599 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 YIPF1Q9Y548 306 aa11.53□□□□□ -0.56
SCN9A-205ENST00000454569 BRWD1Q9NSI6 2320 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 GOLGA6L9A6NEM1 432 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 ENC1O14682 589 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 ZBED1O96006 694 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 HMGA1P17096 107 aaKnown RBP11.52□□□□□ -0.57
SCN9A-205ENST00000454569 ACADSBP45954 432 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 PRSS12P56730 875 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 SLC8A3P57103 927 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 TWF1Q12792 350 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 SMARCB1Q12824 385 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 C15orf59Q2T9L4 293 aaPredicted RBP11.52□□□□□ -0.57
SCN9A-205ENST00000454569 OTUD1Q5VV17 481 aaPredicted RBP11.52□□□□□ -0.57
SCN9A-205ENST00000454569 SLFN11Q7Z7L1 901 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 RHOT2Q8IXI1 618 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 NUP93Q8N1F7 819 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 RNF10Q8N5U6 811 aaKnown RBP11.52□□□□□ -0.57
SCN9A-205ENST00000454569 VN1R2Q8NFZ6 395 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 C2orf15Q8WU43 125 aaKnown RBP11.52□□□□□ -0.57
SCN9A-205ENST00000454569 SLC22A17Q8WUG5 538 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 RXFP2Q8WXD0 754 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 TRIM11Q96F44 468 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 CFAP57Q96MR6 1250 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 TSGA10Q9BZW7 698 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 TTYH1Q9H313 450 aaPredicted RBP11.52□□□□□ -0.57
SCN9A-205ENST00000454569 PNPLA8Q9NP80 782 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 NGRNQ9NPE2 291 aaKnown RBP11.52□□□□□ -0.57
SCN9A-205ENST00000454569 WDR35Q9P2L0 1181 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 UVRAGQ9P2Y5 699 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 FBXW11Q9UKB1 542 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 NUDT5Q9UKK9 219 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 STRIP2Q9ULQ0 834 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 NAALADL1Q9UQQ1 740 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 INSL5Q9Y5Q6 135 aa11.52□□□□□ -0.57
SCN9A-205ENST00000454569 C2CD4BA6NLJ0 364 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 PRRG1O14668 218 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 RFPL2O75678 378 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 ATXN1P54253 815 aaKnown RBP11.51□□□□□ -0.57
SCN9A-205ENST00000454569 CCDC14Q49A88 953 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 PPP1R2P3Q6NXS1 205 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 DCUN1D2Q6PH85 259 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 DENND5BQ6ZUT9 1274 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 SLC26A9Q7LBE3 791 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 DEFB106AQ8N104 65 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 SIX6OS1Q8N1H7 587 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 KREMEN2Q8NCW0 462 aa11.51□□□□□ -0.57
SCN9A-205ENST00000454569 SLC7A14Q8TBB6 771 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms