RNA–Protein interactions for RNA: ENST00000425660.5

ACTB-204, Transcript of actin beta, humanhuman

TSL 1 (best)

Gene ACTB, Length 1,845 nt, Biotype nonsense mediated decay, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-204ENST00000425660 KCTD6Q8NC69 237 aa15.89■□□□□ 0.13
ACTB-204ENST00000425660 ATL2Q8NHH9 583 aa15.89■□□□□ 0.13
ACTB-204ENST00000425660 FAM71BQ8TC56 605 aa15.89■□□□□ 0.13
ACTB-204ENST00000425660 GRK7Q8WTQ7 553 aa15.89■□□□□ 0.13
ACTB-204ENST00000425660 MCOLN1Q9GZU1 580 aa15.89■□□□□ 0.13
ACTB-204ENST00000425660 ZCWPW1Q9H0M4 648 aa15.89■□□□□ 0.13
ACTB-204ENST00000425660 POPDC2Q9HBU9 364 aa15.89■□□□□ 0.13
ACTB-204ENST00000425660 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.89■□□□□ 0.13
ACTB-204ENST00000425660 MARCH5Q9NX47 278 aa15.89■□□□□ 0.13
ACTB-204ENST00000425660 ZNF487B1APH4 448 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 LIASO43766 372 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 CD48P09326 243 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 BDNFP23560 247 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 GBP1P32455 592 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 NOS2P35228 1153 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 PDK2Q15119 407 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 KAZNQ674X7 775 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 PM20D1Q6GTS8 502 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 C4orf50Q6ZRC1 276 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 BHLHA9Q7RTU4 235 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 DEFB128Q7Z7B8 93 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 DDX42Q86XP3 938 aaKnown RBP eCLIP15.88■□□□□ 0.132e-24■□□□□ 9.3
ACTB-204ENST00000425660 DEFB106AQ8N104 65 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 LRRC43Q8N309 656 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 MREGQ8N565 214 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 COLEC11Q9BWP8 271 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 RHOBTB2Q9BYZ6 727 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 FRMD8P1Q9BZ68 369 aaPredicted RBP15.88■□□□□ 0.13
ACTB-204ENST00000425660 ULBP1Q9BZM6 244 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 C11orf49Q9H6J7 331 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 TMEM39AQ9NV64 488 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 OGFRQ9NZT2 677 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 ATP11BQ9Y2G3 1177 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 NEU2Q9Y3R4 380 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 USP3Q9Y6I4 520 aa15.88■□□□□ 0.13
ACTB-204ENST00000425660 COL4A4P53420 1690 aaPredicted RBP15.88■□□□□ 0.13
ACTB-204ENST00000425660 FYNP06241 537 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 FAM153BP0C7A2 387 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 CAPN2P17655 700 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 FGFR3P22607 806 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 SLC11A1P49279 550 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 IKBKEQ14164 716 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 FAM153CQ494X1 144 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 SND1Q7KZF4 910 aaKnown RBP eCLIP15.87■□□□□ 0.132e-17■□□□□ 9.8
ACTB-204ENST00000425660 IRGQQ8WZA9 623 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 NDRG1Q92597 394 aaKnown RBP15.87■□□□□ 0.13
ACTB-204ENST00000425660 HSPH1Q92598 858 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 NKD2Q969F2 451 aaPredicted RBP15.87■□□□□ 0.13
ACTB-204ENST00000425660 FAM149B1Q96BN6 582 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 FUBP3Q96I24 572 aaKnown RBP eCLIP15.87■□□□□ 0.13
ACTB-204ENST00000425660 GDAP1L1Q96MZ0 367 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 NPY6RQ99463 290 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 FAM129AQ9BZQ8 928 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 ZDHHC18Q9NUE0 388 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 FAM153AQ9UHL3 310 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 GAS8O95995 478 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 ZBED1O96006 694 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 GALTP07902 379 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 CDR1P51861 262 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 LMNB2Q03252 620 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 ELAVL2Q12926 359 aaKnown RBP15.87■□□□□ 0.13
ACTB-204ENST00000425660 SNX1Q13596 522 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 PTK6Q13882 451 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 DPYSL3Q14195 570 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 HLTFQ14527 1009 aaKnown RBP eCLIP15.87■□□□□ 0.13
ACTB-204ENST00000425660 DPYSL2Q16555 572 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 LRRC26Q2I0M4 334 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 VARS2Q5ST30 1063 aaKnown RBP15.87■□□□□ 0.13
ACTB-204ENST00000425660 OTUD1Q5VV17 481 aaPredicted RBP15.87■□□□□ 0.13
ACTB-204ENST00000425660 MAP7D3Q8IWC1 876 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 TTC13Q8NBP0 860 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 SLC35B2Q8TB61 432 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 PAWRQ96IZ0 340 aaKnown RBP15.87■□□□□ 0.13
ACTB-204ENST00000425660 SNRNP25Q9BV90 132 aaKnown RBP15.87■□□□□ 0.13
ACTB-204ENST00000425660 GPR62Q9BZJ7 368 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 NEUROG2Q9H2A3 272 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 PRDM10Q9NQV6 1147 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 GRHL1Q9NZI5 618 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 CALCOCO1Q9P1Z2 691 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 STAP1Q9ULZ2 295 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 HPCAL4Q9UM19 191 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 DRG1Q9Y295 367 aaKnown RBP15.87■□□□□ 0.13
ACTB-204ENST00000425660 FAN1Q9Y2M0 1017 aa15.87■□□□□ 0.13
ACTB-204ENST00000425660 SF3B1O75533 1304 aaKnown RBP eCLIP15.87■□□□□ 0.132e-7■■□□□ 13.7
ACTB-204ENST00000425660 YJEFN3A6XGL0 299 aa15.86■□□□□ 0.13
ACTB-204ENST00000425660 TBKBP1A7MCY6 615 aa15.86■□□□□ 0.13
ACTB-204ENST00000425660 E7ENQ6 273 aa15.86■□□□□ 0.13
ACTB-204ENST00000425660 RRP9O43818 475 aaKnown RBP15.86■□□□□ 0.13
ACTB-204ENST00000425660 CST8O60676 142 aa15.86■□□□□ 0.13
ACTB-204ENST00000425660 IL4RP24394 825 aa15.86■□□□□ 0.13
ACTB-204ENST00000425660 TNNT3P45378 269 aaPredicted RBP15.86■□□□□ 0.13
ACTB-204ENST00000425660 CDH6P55285 790 aa15.86■□□□□ 0.13
ACTB-204ENST00000425660 KRT17Q04695 432 aa15.86■□□□□ 0.13
ACTB-204ENST00000425660 BYSLQ13895 437 aaKnown RBP15.86■□□□□ 0.13
ACTB-204ENST00000425660 OASLQ15646 514 aaKnown RBP15.86■□□□□ 0.13
ACTB-204ENST00000425660 NFE2Q16621 373 aaPredicted RBP15.86■□□□□ 0.13
ACTB-204ENST00000425660 KCTD19Q17RG1 926 aaPredicted RBP15.86■□□□□ 0.13
ACTB-204ENST00000425660 DCAF6Q58WW2 860 aa15.86■□□□□ 0.13
ACTB-204ENST00000425660 ERMARDQ5T6L9 678 aa15.86■□□□□ 0.13
ACTB-204ENST00000425660 SCYL2Q6P3W7 929 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 156.8 ms