RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 IL1RL1Q01638 556 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 SLC45A4Q5BKX6 768 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 TTI2Q6NXR4 508 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 ZBTB45Q96K62 511 aaPredicted RBP11.12□□□□□ -0.63
PTCH1-206ENST00000421141 AKAP7Q9P0M2 348 aaPredicted RBP11.12□□□□□ -0.63
PTCH1-206ENST00000421141 DERAQ9Y315 318 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 L3MBTL1Q9Y468 752 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 ZNF638Q14966 1978 aaKnown RBP11.12□□□□□ -0.63
PTCH1-206ENST00000421141 IGSF6O95976 241 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 STIP1P31948 543 aaKnown RBP11.12□□□□□ -0.63
PTCH1-206ENST00000421141 ARID5BQ14865 1188 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 MRNIPQ6NTE8 343 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 RSRC1Q96IZ7 334 aaKnown RBP11.12□□□□□ -0.63
PTCH1-206ENST00000421141 CASS4Q9NQ75 786 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 SELENONQ9NZV5 590 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.12□□□□□ -0.63
PTCH1-206ENST00000421141 NCAPHQ15003 741 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 SMAD1Q15797 465 aaKnown RBP11.12□□□□□ -0.63
PTCH1-206ENST00000421141 SHROOM1Q2M3G4 852 aaPredicted RBP11.12□□□□□ -0.63
PTCH1-206ENST00000421141 RGL4Q8IZJ4 473 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 B3GALNT2Q8NCR0 500 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 KIAA0895Q8NCT3 520 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 PIK3R5Q8WYR1 880 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 ALG6Q9Y672 507 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 GYPCP04921 128 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 HDCP19113 662 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 CHRM3P20309 590 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 CHKAP35790 457 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 SYCP2LQ5T4T6 812 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 RXFP2Q8WXD0 754 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 AHCYL2Q96HN2 611 aaKnown RBP11.12□□□□□ -0.63
PTCH1-206ENST00000421141 ITM2BQ9Y287 266 aa11.12□□□□□ -0.63
PTCH1-206ENST00000421141 IFRD1O00458 451 aaPredicted RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 RTP1P59025 263 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 GCNT1Q02742 428 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 HSDL1Q3SXM5 330 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ATAT1Q5SQI0 421 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ABHD15Q6UXT9 468 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 UNC93AQ86WB7 457 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 FAM71DQ8N9W8 422 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ZCCHC2Q9C0B9 1178 aaKnown RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 NEU2Q9Y3R4 380 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ENDOD1O94919 500 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ZNF135P52742 658 aaPredicted RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 VCPP55072 806 aaKnown RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 NUGGCQ68CJ6 796 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 IL31RAQ8NI17 732 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 POPDC2Q9HBU9 364 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 LNPEPQ9UIQ6 1025 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 TRMT6Q9UJA5 497 aaKnown RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 SNX12Q9UMY4 172 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 SPACA6W5XKT8 324 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 PLIN4Q96Q06 1357 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 TTC31Q49AM3 519 aaPredicted RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 FAM131BQ86XD5 332 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 SCUBE3Q8IX30 993 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 BRI3BPQ8WY22 251 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 NCLNQ969V3 563 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 THAP2Q9H0W7 228 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 HPSEQ9Y251 543 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 C10orf71Q711Q0 1435 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ATP8B1O43520 1251 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 LGR5O75473 907 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ATP1A1P05023 1023 aaKnown RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 CYP2A6P11509 494 aaPredicted RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 DARSP14868 501 aaKnown RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 SMPD1P17405 629 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ITIH2P19823 946 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 GRK3P35626 688 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 TUBP50607 506 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 MTFR1Q15390 333 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 PHLDB3Q6NSJ2 640 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 TNS4Q8IZW8 715 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 NT5MQ9NPB1 228 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 NMRK1Q9NWW6 199 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 AMACRQ9UHK6 382 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 NOVA2Q9UNW9 492 aaKnown RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 TRAF3IP3Q9Y228 551 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 SUPT3HB4E1H0 165 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 SUPT3HO75486 399 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 SERPINB9P50453 376 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 HIST2H2ACQ16777 129 aaPredicted RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 HIST2H2AA3Q6FI13 130 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 TPCN2Q8NHX9 752 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 VCPIP1Q96JH7 1222 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 RMDN2Q96LZ7 410 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 INPP4AQ96PE3 977 aaPredicted RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 TSPAN3O60637 253 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ITGB5P18084 799 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 GLUD2P49448 558 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ARHGDIAP52565 204 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 NNTQ13423 1086 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 CLEC16AQ2KHT3 1053 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 ANKMY2Q8IV38 441 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 NUDCD3Q8IVD9 361 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 UPF3AQ9H1J1 476 aaKnown RBP11.11□□□□□ -0.63
PTCH1-206ENST00000421141 PPCSQ9HAB8 311 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 GIMAP4Q9NUV9 329 aa11.11□□□□□ -0.63
PTCH1-206ENST00000421141 KLRG2A4D1S0 409 aaPredicted RBP11.1□□□□□ -0.63
PTCH1-206ENST00000421141 BAG2O95816 211 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms